Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4138 ATGAGGAAGAAGAGTTACCCATATTGTTCTTTTCAATATCCATCATTTTATTATTCTTCTTCTGATGATAAACACACACCAAATAATCACAATCACAATGCTGAGAAACAGAAACATGCATGTCATGTTTGCAGTAAGCATTTTTCATCCAACAAAGCTTTGAATGGACACATGAGAATACACAAAAAAGATAAAAAGGGTATTCCTCACGATGAAGATCAATTTCAATGTCAACTTAGTTCAGCAGAATATATTCCAGAAAAATCGCATAACTGCAGCAAGAGGAAGAATGCTATCAATACTATTGAAAACGATCGTTGCGACAAGAAAAGGCTGAAACTTTGCGAAAATATGACTAATGAGAAGATCAAGGAACAACCTGTGACGTCAAGTACCGGTCATGTTAGCAACGTTGATGAAACAACTAAGATCAAAGTGAAGGATAATTAG 450 0.3489 MRKKSYPYCSFQYPSFYYSSSDDKHTPNNHNHNAEKQKHACHVCSKHFSSNKALNGHMRIHKKDKKGIPHDEDQFQCQLSSAEYIPEKSHNCSKRKNAINTIENDRCDKKRLKLCENMTNEKIKEQPVTSSTGHVSNVDETTKIKVKDN* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4138 149 MobiDBLite consensus disorder prediction 125 139 - -
Psa3g4138 149 Gene3D Classic Zinc Finger 3 66 - -
Psa3g4138 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Psa3g4138 149 MobiDBLite consensus disorder prediction 125 149 - -
Psa3g4138 149 SUPERFAMILY beta-beta-alpha zinc fingers 36 65 IPR036236 -
Psa3g4138 149 Pfam C2H2-type zinc finger 39 63 - -
Psa3g4138 149 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Psa3g4138 149 SMART c2h2final6 39 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4138 Psa-Chr3 389025828 389026277 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa3g4138 zf-C2H2_6 3.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4138 - K19871 mtr:MTR_1g053530 56.6102