Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4136 ATGAGGAAGAAGAGTTACCCATATTGTTCTTTTCAATATCCATCATTTTATTATTCTTCTTCTGATGATAAACACACACCAAATAATCACAATCACAATGCTGAGAAACAGAAACATGCATGTCATGTTTGCAGTAAGCATTTTTCATCCAACAAAGCTTTGAATGGACACATGAGAATACACAAAAAAGATAAAAAGGGTATTCCTCACGATGAAGATCAATTTCAATGTCAACTTAGTTCAGCAGAATATATTCCAGAAAAATCGCATAACTGCAGCAAGAGGAAGAATGCTATCAATACTATTGAAAACGATCGTTGCGACAAGAAAAGGCTGAAACTTTGCGAAAGTATGACTAATGAGAAGATCAAGGAACAACCTGTGACGCCAAGTACCGGTCATGTTAGCAACGTTGATGAAACAACTAAGATCAAAGTGAAGGATAATTAG 450 0.3533 MRKKSYPYCSFQYPSFYYSSSDDKHTPNNHNHNAEKQKHACHVCSKHFSSNKALNGHMRIHKKDKKGIPHDEDQFQCQLSSAEYIPEKSHNCSKRKNAINTIENDRCDKKRLKLCESMTNEKIKEQPVTPSTGHVSNVDETTKIKVKDN* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4136 149 Gene3D Classic Zinc Finger 3 66 - -
Psa3g4136 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Psa3g4136 149 MobiDBLite consensus disorder prediction 124 139 - -
Psa3g4136 149 SUPERFAMILY beta-beta-alpha zinc fingers 36 65 IPR036236 -
Psa3g4136 149 MobiDBLite consensus disorder prediction 124 149 - -
Psa3g4136 149 Pfam C2H2-type zinc finger 39 63 - -
Psa3g4136 149 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Psa3g4136 149 SMART c2h2final6 39 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4136 Psa-Chr3 389009074 389009523 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa3g4136 zf-C2H2_6 3.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4136 - K19871 mtr:MTR_1g053530 57.3806