Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4134 ATGAGAAAGAAAAGTTATCCACATTGTTCTTTCTATTCTCCATTATCTTCTTATTTCTCTTGTGATGATAATCACACAAAAAACAACGAGAAATTACTTGCTTCAAGAACCAATCAATGTCACAATGACAATGATGATGAGAAACAGAAACATGAATGTCATTTTTGCAGTAAGGGTTTTTCATCCAACAAGGCTTTGTATGGACACATGAGAATCCACAAAAAAGATAACAAGGGTATTCCTCCACGACCCGCTTCATCTTCTCAGAATATTGATTTATCGAAATATTTGCCACCAAGGTCACATAAATGCTGCAAGAGAAATTATGATATCATTACCATTGATGATCAACAGTTTTCTTGTGATTATAGTCATGGTGAGGGTAAAAGACAGAAGCTTCAGAGCAATATGGTTGATGAGAGGATCAGGGAACAAGCTGCGACACCAAATATATGTCCTCTTAGCGACATTGATGAAACCGTGAAGATCAAAGTGAAGGATATATAA 507 0.357 MRKKSYPHCSFYSPLSSYFSCDDNHTKNNEKLLASRTNQCHNDNDDEKQKHECHFCSKGFSSNKALYGHMRIHKKDNKGIPPRPASSSQNIDLSKYLPPRSHKCCKRNYDIITIDDQQFSCDYSHGEGKRQKLQSNMVDERIREQAATPNICPLSDIDETVKIKVKDI* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4134 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Psa3g4134 168 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Psa3g4134 168 Gene3D Classic Zinc Finger 23 104 - -
Psa3g4134 168 SMART c2h2final6 51 73 IPR013087 -
Psa3g4134 168 SUPERFAMILY beta-beta-alpha zinc fingers 48 76 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4134 Psa-Chr3 388993309 388993815 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa3g4134 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4134 - K09228 mtr:MTR_1g052185 115.546