Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4110 ATGCCCGCCGGCATGGACATGTCACTCGACGACATCATCAACACCACCACCGCTCGCCGCCGATTCACCACCGCTCACGGACCAAAGCGCAACATCGGCGTTCCTAACACAACCAGAATCACGCCGTACTCTATTCCTCCATCTCAGGTTGCTAGAGAAGCGTTGCGAAGAAGCAGAAGCAGCAGCAGCGTCGATGTTCACGAAACGATTCTCGATCGTGACGCTGTTCAACTTCGACCTATCACTAAACTCTATTTGTCTAACTTGGATGATAGGGTTTCCAACGAAGATATTCATCTGTTGTTCTCGGAAGAAGGTGCGTTGGAAAGGTATTCCATCCATTATGATCAGTATGGGAGATCAAAAGGAACAGCAGAAGTTGTCTTTACAAGGCAGTTTGATGCTTTAGCAGCCCTCAAAAGGTACAACAATATGAGGCTTGATGGAAAGCCATTGCAAATTGAGCTTGTTGGAATTGGAACAAGTTCTATTACTCCTGCTGATAGGCCTCTTGGTCAAAGCAGCATACCGGGAAGACCAACTCTTGGTCAAAGCAGCATACTGGGAAGACCAAATGACCGTGTCTTTGCAAGGGAAGAAAGGAAGATTGGAGGTGGCAGGTACCATAATAGCTTTAAACATGGCTATTTTCCAATGGGCCATGGAGAAGAGAAGTTCCATACGAGGAAAGTGTCTCTTGGAGCTATTGGTCCCAACTTTGAGCGTTATGACCACCGCCACGTAGAAGCAAAACGCAATTTCCAAAAGTTGTCTGTGAAAGATCTTGATGAAGATCTGGATAAGTATCACCTAGAGGCTATGCGGATTAACAAAGCAAATGGAAAGGGAAATCAGGATTGA 861 0.4623 MPAGMDMSLDDIINTTTARRRFTTAHGPKRNIGVPNTTRITPYSIPPSQVAREALRRSRSSSSVDVHETILDRDAVQLRPITKLYLSNLDDRVSNEDIHLLFSEEGALERYSIHYDQYGRSKGTAEVVFTRQFDALAALKRYNNMRLDGKPLQIELVGIGTSSITPADRPLGQSSIPGRPTLGQSSILGRPNDRVFAREERKIGGGRYHNSFKHGYFPMGHGEEKFHTRKVSLGAIGPNFERYDHRHVEAKRNFQKLSVKDLDEDLDKYHLEAMRINKANGKGNQD* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4110 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 152 IPR000504 GO:0003723
Psa3g4110 286 PANTHER THO COMPLEX SUBUNIT 4A 5 272 - -
Psa3g4110 286 Gene3D - 54 225 IPR012677 -
Psa3g4110 286 SUPERFAMILY RNA-binding domain, RBD 76 156 IPR035979 GO:0003676
Psa3g4110 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 159 IPR000504 GO:0003723
Psa3g4110 286 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 272 - -
Psa3g4110 286 SMART rrm1_1 83 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4110 Psa-Chr3 383982770 383985810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4110 84 157 Eukaryotic Initiation Factors Gene Family AT2G23350 36.486 3.10e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4110 K12881 - gmx:100785926 234.958