Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4103 ATGGGGAGTATGAGTGAGCATGATAGAAAACGGCGTCACTTTAGCTCCTTGTCACCCACACCTGAACCTGCCAAGAAGTTACCGTTCTTGCCTATTTCTGAAGACAAAAAGCTTGATATTGCTGTACTTCAGTATCAAAATCAAAAGCTTACACAGAAATTAGAGACTCAGAAGTTAGAATATGCAACTTTTGAGAATAAATTTTCTCAACTGAAGGAGAGGCAACAGTCATATGATTCTACTTTAGCAGTGGTCAAGAAGTCTTGGGAGCAGCTGGTTAATGATCTAGAGTCGCGTTCTGAACGCACAAGGGAGTCTAACCGCAAAGCATATTCCAGATTTGTATCAAGTACAGATGATGGTAGTTCATCTACTGTTCAAGATGTTTTTCTTAGCCGACTTTTGCAAACTGGTGCAACTGAAAGTTCCTCCTCTTCTCACTTCGCAAATGAGATGGTGCAACATAGAGAAATTACTTCTGAAAAAGCTAAAAACATTTTGAATAATATATTGACATTCATTAATAACTTTCGGTGTTTGAAAGATGGATTTCATACTGCACTACTGAAAAAGCTTCGAGGAGATGTTTCATGTGGGCAGATGTTATCCAATGATATGGAGGTGGAAAGTAAAAACTTGAGATTGACATTAAGTGAACTTCACTTAAAGCACAAGTCTTTAGCAAGCGTTTTCCGAATTCAGAGGGATCTGGATGCAAAAAATAAAGCCGAGCTTAAACAATTAAAAGGGGAACTGGAAAGCACGGTCTCAGAGTTAGAAGAAAACAATCACAAACTTGCAACTCTTAAGGTAGAAAAGGATGCAGCCAAAGGGGCAGTTCTTCCAGTATTAACTGTTGGAAATACAAACATTCCTAATGATAAGATCAGAGACAAACAAAAGGATTTACAAGATATGGAATCTTCTTTGAAGGAGCTACTGAACCGAGCTTCAACACGATTAGTGGAACTCAAAAGTCTTCATGAGGAAAGAATAAGATTATTGCAGCAATTGTGTGATCTACAGAACACACTGAAGAATTTGAAGTGTATTACCTCTTCCCATGCGTTCCAATTGGTTAAAGATCAGATAGAAAAATCAAAATTGGAAGTGCAGGAGTATCAGGCCTTATATGAGAAACTACAGGCTGAGAAGGATAATCTTGCATGGAGGGAGAGGGAGTGGTACATCAAAAATGATTTAGCTGATCTTTTTCAAAGATCTGTGACAGTTTCTGATCTTAGAGTTGCTGATATACGCACTGAGATACAGAAAATGATCGAGCAAAAAAAGGTGATTGAAAACAAGCTTAAAGAGGAAGCAAGAGAACAGGGAAGGAAAGAAATTATTGCTGAATTTAAATCTCTGCTTTCTTCGTTTCCTGAGGAGATGGGATCCATGCAAAGTCAACTTAGTAAGTATAAAGAATCAGCTTCAGATCTCCATTCTCTGCGTGCAGATGTGCATTCTATTTCCAGTACTCTTGTTCGGAAGGTAAAAGAATGTGACAAATTATCTGTTAGGTCTGCTGGTCAACTTGCCGAGATAAACAGACTTCTTGCTGTGGTTCAAGATTTGCGAGTGACTCAGGATGAGATGAAGTTGATACTGCGAATGTATAGACACGAGACCATTGATTCAAGGGATGTCATGGAAGCAAGGGAAGCAGAATACGGAGCATGGGCACATGTTCAAAGTTTGAAATCATCTCTTGATGAGCACAACTTAGAACTTCGAGTTAAAACAGCAAATGAATCAGAAGCCAGATCACAGCAAAACCTTGCTGCAGCTGAAGCTGAGATCGCAGACATGAGACATAGATTAGATGATTCTAAAAGGGAGATGTGTAAAATGTCTGATGTCTCGAGATCTAAAAATGAAGAAAATGAAGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGACATGCAGACCCAAAACCAACATCTGTTGCATCAGATTACTGAGAGAGATGATTACAATATTAAGCTCGTTTTAGAAGGTGTAAGGGCTAGACAAAAACAGGATTCTTTGATTTTGGAGAAGCGATTAATGGAGCAGGAGAACCAACAATCAAATGTATCTTTTAATTTATACAATACCAAAGCTGCAAGAATTGAAGACCAGTCAAGGTTTTGCTCAGATCAGATTCAAAAACTTGAGGACAACAAACTTCATAGTTCTGGCTGTTTGGAGAATACACAAAGAAGGCTGTCGGATATTAGACCATCATCGCAGCAGGTTAGGGATTCAGTGGTGGAATTGCAAGCTAGAATTACCAGTAGTCGGGTGACTCGTATGGAGTTACAAACCGAACTTGAGAAAGAAAGGTTTGCCCAAAAAACAGTAGAGGAAGATCTGGAGGTTGCTAGGAGAAACTTGTCACAACTTAAAGCACAAAATGAGGATTCCTCGGTAACTGATAAGCTTCAACAGGAACTTGGAGAGTACATGGAAATTGTCAAGTGCAGTATTTGTCGAGACAGGACAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTTTGCAACTCATGTATCCAGAAAATTGCTGGGAGTCGGCAGCGCAAATGTCCACAATGTGGTGCATGTTTCGGGGCCAATGATATTAAGCCGGTTTATTTGTAA 2637 0.3917 MGSMSEHDRKRRHFSSLSPTPEPAKKLPFLPISEDKKLDIAVLQYQNQKLTQKLETQKLEYATFENKFSQLKERQQSYDSTLAVVKKSWEQLVNDLESRSERTRESNRKAYSRFVSSTDDGSSSTVQDVFLSRLLQTGATESSSSSHFANEMVQHREITSEKAKNILNNILTFINNFRCLKDGFHTALLKKLRGDVSCGQMLSNDMEVESKNLRLTLSELHLKHKSLASVFRIQRDLDAKNKAELKQLKGELESTVSELEENNHKLATLKVEKDAAKGAVLPVLTVGNTNIPNDKIRDKQKDLQDMESSLKELLNRASTRLVELKSLHEERIRLLQQLCDLQNTLKNLKCITSSHAFQLVKDQIEKSKLEVQEYQALYEKLQAEKDNLAWREREWYIKNDLADLFQRSVTVSDLRVADIRTEIQKMIEQKKVIENKLKEEAREQGRKEIIAEFKSLLSSFPEEMGSMQSQLSKYKESASDLHSLRADVHSISSTLVRKVKECDKLSVRSAGQLAEINRLLAVVQDLRVTQDEMKLILRMYRHETIDSRDVMEAREAEYGAWAHVQSLKSSLDEHNLELRVKTANESEARSQQNLAAAEAEIADMRHRLDDSKREMCKMSDVSRSKNEENEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKQDSLILEKRLMEQENQQSNVSFNLYNTKAARIEDQSRFCSDQIQKLEDNKLHSSGCLENTQRRLSDIRPSSQQVRDSVVELQARITSSRVTRMELQTELEKERFAQKTVEEDLEVARRNLSQLKAQNEDSSVTDKLQQELGEYMEIVKCSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4103 878 Pfam Zinc finger, C3HC4 type (RING finger) 826 864 IPR018957 GO:0046872
Psa3g4103 878 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 878 - -
Psa3g4103 878 Coils Coil 673 693 - -
Psa3g4103 878 MobiDBLite consensus disorder prediction 1 16 - -
Psa3g4103 878 SMART ring_2 826 864 IPR001841 -
Psa3g4103 878 ProSitePatterns Zinc finger RING-type signature. 841 850 IPR017907 -
Psa3g4103 878 Coils Coil 242 269 - -
Psa3g4103 878 Coils Coil 783 810 - -
Psa3g4103 878 Coils Coil 364 391 - -
Psa3g4103 878 ProSiteProfiles Zinc finger RING-type profile. 826 864 IPR001841 -
Psa3g4103 878 PANTHER RING FINGER PROTEIN-RELATED 1 878 IPR013956 GO:0004842|GO:0010390
Psa3g4103 878 Coils Coil 580 614 - -
Psa3g4103 878 Coils Coil 416 443 - -
Psa3g4103 878 MobiDBLite consensus disorder prediction 1 26 - -
Psa3g4103 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 807 878 IPR013083 -
Psa3g4103 878 Coils Coil 86 106 - -
Psa3g4103 878 SUPERFAMILY RING/U-box 819 877 - -
Psa3g4103 878 Coils Coil 706 726 - -
Psa3g4103 878 Coils Coil 40 74 - -
Psa3g4103 878 Coils Coil 296 316 - -
Psa3g4103 878 CDD RING-HC_BRE1_like 824 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4103 Psa-Chr3 383679464 383695247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4103 801 877 C3H Transcription Factor Family AT2G42030 31.250 1.27e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4103 K10696 - gmx:100790337 1292.72