Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4081 ATGGCTACTTGGTATGGTCCCCCGGAAGGTTATGGAAGTGATGCCGGTGCTTGTGGTTATGGAAAAGCTGTTAGCCAACCTCCATACAACTCAATGATAGCAGCAGGAAACCCTTTCATCTACCAATCAGGCAAAGGATGCGGTTCATGTTATGAGATAAAGTGCACAGGAAATTCTGCTTGCTCAGGCAACCCTATTAGGGTAGTTATCACTGATTTGTGTCCTGAATGTAGTCATTATTTTGATTTGAGTGGCAAAGCTTTTGGTTCCATGGCAAATTCTGGTCAAGCTAACAACCTACGCACTGCTGGAAAAATATACGTTCAATATCAAAAGTGTCCCTAA 345 0.429 MATWYGPPEGYGSDAGACGYGKAVSQPPYNSMIAAGNPFIYQSGKGCGSCYEIKCTGNSACSGNPIRVVITDLCPECSHYFDLSGKAFGSMANSGQANNLRTAGKIYVQYQKCP* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4081 114 Gene3D - 1 114 IPR036908 -
Psa3g4081 114 PANTHER EXPANSIN-B2-RELATED 2 112 - -
Psa3g4081 114 PRINTS Expansin/Lol pI family signature 14 32 IPR007118 GO:0005576
Psa3g4081 114 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Psa3g4081 114 PRINTS Expansin/Lol pI family signature 103 114 IPR007118 GO:0005576
Psa3g4081 114 SUPERFAMILY Barwin-like endoglucanases 2 113 IPR036908 -
Psa3g4081 114 PANTHER EXPANSIN-B3 2 112 - -
Psa3g4081 114 Pfam Lytic transglycolase 34 110 IPR009009 -
Psa3g4081 114 SMART dpbb_1 33 110 IPR007112 -
Psa3g4081 114 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 15 114 IPR007112 -
Psa3g4081 114 PRINTS Major pollen allergen Lol pI signature 35 46 IPR005795 GO:0005576|GO:0019953
Psa3g4081 114 PRINTS Major pollen allergen Lol pI signature 55 65 IPR005795 GO:0005576|GO:0019953
Psa3g4081 114 PRINTS Major pollen allergen Lol pI signature 92 107 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4081 Psa-Chr3 381964068 381965014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4081 2 113 Expansin Gene Family AT1G65680 60.000 7.03e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4081 - - vra:106780276 172.555