Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4080 ATGACTTTTACTTTAGGACATGCATTCTCTCGTATACTAATCTTTGTAGGTTCACTCTCAATACTACTAAGTACCCGTTCCTCTTGTTTTAAACCCAAAAAACTTGTTACTATTACTTCGAACTTCTCATCTGATTTAGATTCGTCATCTTCATTGGCTACTTGGTATGGACCTTCTGAGGGTGATGGGAGTGAAGGTGGTGCTTGTGGATATGGAAAAGCTGTTGGCCTGCCTCCAATCAATTCTATGATATCCGCTGGAAGCCCATTCATCTTCCAAGAAGGCAAAGGATGTGGCTCTTGTTATCAGATTAAGTGCACAGGAAATTCCGCATGCTCAGGAAACCCTGTGACGGTAGTTATCACTGATTTGTGTCCTGAGTGTAGTCATTATTTTGATTTGAGTGGTAAAGCTTTTAGTTCCATGGCAATTTCAAGTCAAGTTGACAAGCTACGGACAGCTGGGAAAGTAGCTGTTGAATATCAAAGAGTTGCATGCAACTATCCTGGAGTACCAATAACTTTTCGTGTGGATCCTGGATCTAACCAACAATATTTTGCTATTGTAATTGAATACGAAGATGGAGATGGTGATCTCAAAACAGTTGAGCTCAAAGAAGGACTTGGCTCAGCAAATTGGGAAGCCATGCAACGATCATGGGGTGCTGTTTGGAAACTTGACAAAGGAGCATCACTAAGAGCACCATTTTCTATTAGGCTAACTACAATTGAGTCTGGAAAAATATTTGTGGCTAATAATGTGATCCCTGTAGGTTGGAAGCCTGGTCAGATTTTTAGAGCAGTTGGAAATTTTAATTAA 819 0.4029 MTFTLGHAFSRILIFVGSLSILLSTRSSCFKPKKLVTITSNFSSDLDSSSSLATWYGPSEGDGSEGGACGYGKAVGLPPINSMISAGSPFIFQEGKGCGSCYQIKCTGNSACSGNPVTVVITDLCPECSHYFDLSGKAFSSMAISSQVDKLRTAGKVAVEYQRVACNYPGVPITFRVDPGSNQQYFAIVIEYEDGDGDLKTVELKEGLGSANWEAMQRSWGAVWKLDKGASLRAPFSIRLTTIESGKIFVANNVIPVGWKPGQIFRAVGNFN* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4080 272 PANTHER EXPANSIN-B2-RELATED 18 271 - -
Psa3g4080 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 267 IPR007117 -
Psa3g4080 272 Pfam Expansin C-terminal domain 173 256 IPR007117 -
Psa3g4080 272 Gene3D - 32 166 IPR036908 -
Psa3g4080 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 171 IPR007112 -
Psa3g4080 272 SMART dpbb_1 84 161 IPR007112 -
Psa3g4080 272 Pfam Lytic transglycolase 85 161 IPR009009 -
Psa3g4080 272 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Psa3g4080 272 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Psa3g4080 272 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Psa3g4080 272 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Psa3g4080 272 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
Psa3g4080 272 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
Psa3g4080 272 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Psa3g4080 272 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Psa3g4080 272 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Psa3g4080 272 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Psa3g4080 272 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Psa3g4080 272 PRINTS Major pollen allergen Lol pI signature 222 239 IPR005795 GO:0005576|GO:0019953
Psa3g4080 272 SUPERFAMILY PHL pollen allergen 173 266 IPR036749 -
Psa3g4080 272 PANTHER EXPANSIN-B3 18 271 - -
Psa3g4080 272 Gene3D - 167 267 IPR036749 -
Psa3g4080 272 SUPERFAMILY Barwin-like endoglucanases 47 170 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4080 Psa-Chr3 381938969 381940340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4080 27 271 Expansin Gene Family AT1G65680 54.435 4.72e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4080 - - gmx:548090 361.303