Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4032 ATGGACAAAAAGGAGTGCAGTTCTTCTCAAGATCCTGATGTTCGAAAAGGACCATGGACAATGGAAGAAGACTTGATCTTGATCAACTATATTGCAAATCATGGTGAAGGTGTTTGGAACTCCTTGGCAAAATCTGCTGGTCTTAAACGTACCGGAAAGAGTTGCAGACTTCGTTGGCTAAATTATCTTCGACCCGATGTTAGACGAGGGAATATTACACCCGATGAACAACTCTTGATCATAGAACTACATGCAAAGTGGGGAAACAGGTGGTCGAAAATCGCGAAACATCTACCGGGACGAACGGATAACGAGATAAAGAACTATTGGAGGACAAGGATTCAGAAGCATATCAAACAAGCTGATCAACAAAACTCTCAGCAACAACAACAGAGTTCTTCTGATATTCAAATAAATGACAATAACGAAAATAATAATAATCAAGTAGCAAGCTCTAGCCAAATTCCCAACATAGCTGAACCTATGGACACCAGCACGAATAATATTATGTCACCACCTTCTTACCAAGGAATTTTGGAACCATTTTCATCTCATCAGTTTCCTACAATCTCTGATCAATCAAGTTCTTGTACCAATGACAATAACTACTGGAGCATGGAAGATCTCTTGTCTTTGCAATTACTTAATGGAGATTAA 657 0.3912 MDKKECSSSQDPDVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPDEQLLIIELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQADQQNSQQQQQSSSDIQINDNNENNNNQVASSSQIPNIAEPMDTSTNNIMSPPSYQGILEPFSSHQFPTISDQSSSCTNDNNYWSMEDLLSLQLLNGD* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4032 218 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 215 IPR044676 GO:0003700|GO:0006355|GO:0043565
Psa3g4032 218 Gene3D - 73 149 - -
Psa3g4032 218 Gene3D - 16 68 - -
Psa3g4032 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Psa3g4032 218 Coils Coil 111 131 - -
Psa3g4032 218 CDD SANT 73 112 IPR001005 -
Psa3g4032 218 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Psa3g4032 218 SMART sant 68 116 IPR001005 -
Psa3g4032 218 SMART sant 15 65 IPR001005 -
Psa3g4032 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Psa3g4032 218 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Psa3g4032 218 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Psa3g4032 218 CDD SANT 18 63 IPR001005 -
Psa3g4032 218 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 215 - -
Psa3g4032 218 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Psa3g4032 218 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4032 Psa-Chr3 374772802 374778039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4032 10 218 MYB Transcription Factor Family AT3G01530 53.774 1.41e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g4032 Myb_DNA-binding 6.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4032 K09422 - gmx:778046 321.242