Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4019 ATGTTCATATTCCGTTTGTTCATCATTTCATTTTTGTTTCTCGCATTAAGAGTTGATAAGGCTAATGCTCAACTATCTTATAAAAAAGTCAGAAACAAACTCTTATCTTACTCGGAAATATTTGTTGATCCATCCGGACATGGAAATTTTACCACCATTCAATCGGCAATCGATTCAATTCCGTCCAACAATAAACATTGGATGGCCATTAGGGTTAAGGTCGGCACTTACAGAGAAAAAGTAGTTATTCCAGAAGATAAACCTTATATCTTATTGAAAGGATCAGGAAAGCGTAAAACTTTGGTTGAATGGAATGACCATTCAGACTTGAGAATTCCTACATTTTCATCATTGGCTGACAATATTGTTGTCAAAGCTATAAGTTTTAGGAACTCATACAACAATCCAATAAATAACAAACCTAAGTTACCTGCAATAGCTGCAAAGGTAAGTGGTGACAAAACTTATTTTTTCAGAGTTGGTTTTTATGGTTATCAAGACACTTTGTATGACTCCAAAGGAAGACATTACTACAAGCTTTGTACCATACAAGGAGCTGTAGACTTTATCTTTGGTGCAGGACAATCTTTGTTTGAGAGGTGTTCCATAAGTGTTATTGGTGATGGTTATATAACAGCACAAGGTAGAGAAAGTCCAAATGATTCAAATGGATTTGTTGTCAAAGATTCACATGTGTTTGGAAATGCTACAACTTATTTGGGAAGAGCTTGGAGACAATATGCAAGAGTTTTATTTTACAATACTAACTTGACCAATGTTATACAACCATTGGGTTGGGATTCATGGAGTTTTTCTACTCATGAGAATCTAATAACATTTGCAGAATATGGGAATTTTGGACCTAGTGCTGAGACATCAAAACGAGTGGGTTGGGTTAATAAACTTGATAAAGCAAGCATTGAGAATATGGCAAGTGTGAACTTCATTGACCACAAGAAAGAATGGATTTATAATCATCCACACTAA 987 0.3495 MFIFRLFIISFLFLALRVDKANAQLSYKKVRNKLLSYSEIFVDPSGHGNFTTIQSAIDSIPSNNKHWMAIRVKVGTYREKVVIPEDKPYILLKGSGKRKTLVEWNDHSDLRIPTFSSLADNIVVKAISFRNSYNNPINNKPKLPAIAAKVSGDKTYFFRVGFYGYQDTLYDSKGRHYYKLCTIQGAVDFIFGAGQSLFERCSISVIGDGYITAQGRESPNDSNGFVVKDSHVFGNATTYLGRAWRQYARVLFYNTNLTNVIQPLGWDSWSFSTHENLITFAEYGNFGPSAETSKRVGWVNKLDKASIENMASVNFIDHKKEWIYNHPH* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4019 328 ProSitePatterns Pectinesterase signature 1. 64 83 IPR018040 -
Psa3g4019 328 SUPERFAMILY Pectin lyase-like 38 318 IPR011050 -
Psa3g4019 328 ProSitePatterns Pectinesterase signature 2. 183 192 IPR033131 -
Psa3g4019 328 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 10 327 - -
Psa3g4019 328 Pfam Pectinesterase 40 317 IPR000070 GO:0030599|GO:0042545
Psa3g4019 328 PANTHER PECTINESTERASE 10-RELATED 10 327 - -
Psa3g4019 328 Gene3D - 36 327 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4019 Psa-Chr3 373035878 373039800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4019 2 275 Carbohydrate Esterase AT2G19150 41.696 4.93e-74 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4019 - - gmx:100819252 440.654