Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4009 ATGGATCTCTCACAGTGCAACCAAGTGCAAGCTATCATAGGAACTATTAGACACAACGAAGCAACACTTGCAAGTGAATTCAGTGACACCATAAACACCATTCCTATCATGTCTCTAACTTCATTTTCAGCCAGACCAGAACTATTATCTCCTAGATTGCCACATTTCATCCAACTAGGGGATGATATTAGCCTTCACATTCAATGCATATCAGCCATTGTAGGAGAATTCGGATGGAAAAAGGTGACAGTAATTTATGAACTTAATAACGACTTTTCGTCTGATCCGGGGATACTACTTAGCCTCTCTTATTCTCTTAAACTAGTTGGTTCTGATATTGATAACCATTTAGTTTTTCCTTCCTTATCCACTCTTCCAGACCCAAAAACTACAATTGAAAATGAGCTTAATAAGCTGAAAAGGATGAGTAATAGGGTCTACCTGATTGTTCATTCTTCTTTAGAGCTAGCTAGCATGCTTTGTGAGAAAGCAAAACAAATAGGTTTGATGGAAAAAGGTTCTGTGTGGATTATCCCAAATGAAGTTGCTGGCCTTCTTGATTCAGTTAATTCTTCTGTTATCTTCAACATGCAAGGTGTTGTTGGATTTAAAACACACTTCATTGAAAAGAGTGGGGCTTTTAGACAGTTTAAGTTCAAATTCCAAAGAAAGTTTGCTTTGGAATACCCTGAAGAAGATAACATAAACCCAAGTATCTTTGCACTCCAAACATATGATGCAACTAAGGCTATTGCTAAGGCTGCAAATAAATCATCACAGGGAAAATTTGAAAGACTGAGTGGAAAGACTTTCTCAAAGAATGGACAATTGTTGCAATCACCAACTTTCAACATAATTAATGTGATTGGGAAAAGTTATAGAGAAATGGCATTTTGGTCTCCAGCACTTGGGTTTTCCAAGAACATTGTTAGCCATAATAAGGTAATGGAGATAAGCACAAATAATGATGATTCAAATGGAGTTTTCAAAACAGTTTATTGGCCGGGAGAATCGCAATCAGTTCCCAAGGGTCACAATAATGAGGAAAGGACATTGAAAATAGCAATACCTTCAAACGGTGCTTTTACTCAGTTTGTGAATGTTGAATATGATCAGGGAAACAACGAACCTACAGTCACTGGTTTCTCAATCAGTATCTTTGAAGCAGCTGTCAAACGTTTACCTTATATTTTAAATTACACGTTTTTTCCCTTCAATGGGTCATATGATGAAATGGTTGATCATGTCTACAATAAGACATTGGATGCTGCGGTTGGTGATACATCAATAGTGGCATATAGATATCATTTAGTGGAATTCTCACAACCTTATATTGAATCTGGCCTACACATGGTGGTTACTGAACAACCAGCAAAATCAAAAGAAACATGGATGTTTTTGGCTGCCTTTACAAAAGAGATGTGGTTGATGATGACAGCTATGCATGTTTTTGTTGGATTTGTTATTTGGTTGATTGAAAGGGAAGTAAATGAAGATCTAAGGGGATTTGGGTCCATGCTATGGTTTTTAGTCACTGTACTATTTTATGCACACAGAGAACCAATAAGAAGACCCTTAGCTCAAGTTGTACTGACACCCTGGTTATTTGCTATTTTCATTGTGACAAATAGTTTCACAGCAAGTTTGACATCTATAACTATTTCACAAGTAAAGCCATCTGTGTTAGATATACAGACCCTTAAAGAAAGAAATTCCCCAATTGGTTGTGATGGAAATTCCTTTATTGTCAAGTATTTGACTGTAGTACTAAAATTCAAGCCTGAGAACATAAGGAAAATAAATTCCATGAGTGACTACCCTGCTGCCTTTGATAACAAGGAAATAGAAGCTGCCTTCTTCGTCGCGCCTCATGCTAAAGTCTTCCTAGCAAAGTACTCGTGTAAGGGCTTTATCAAAGCAGGGAACACTTACAGGCTTGGTGGCTTTGGTTTTGTATTTCCAAAAGGTTCAAGTCTAGCTTCCGACATATCAGAGGCATTGCTTAGTATGATAGAGAGTGGAGAAACGGAACAGCTAGAAAAAGAAATGTTGGATGGGATAGAAAATGGACGCAAAGCTAACTGTTCTGATTTAAAGAGCAAGGGAAAAAATAATACATCGATAGGCCTTCTGCCTTACCTTGGTCTGTTTTCGATCTGTTCTACTATTGCTATTCTTGGGTTGTCATGTTACATGATTTGTTGGTTAGTGAAGAATGTAGAAACTTTGACAAGCCACACAGTTTTAACATTAACACAAGTATGGAGAATATGGAGATGGACAACCAATATTTTTGGTCGGTGCTGTTCAAAACTGCAATCCAGGATCATGAGAAGAGTAAGCAGCTGCACAGAAACAAGAAATGCAGAAGAAAATGTCACTAATAGCCAGCAAATCCCAGTGGTGGTTGAGCTTGTTGATACTGTACTGGCTGCTCATGCTTCATGA 2448 0.377 MDLSQCNQVQAIIGTIRHNEATLASEFSDTINTIPIMSLTSFSARPELLSPRLPHFIQLGDDISLHIQCISAIVGEFGWKKVTVIYELNNDFSSDPGILLSLSYSLKLVGSDIDNHLVFPSLSTLPDPKTTIENELNKLKRMSNRVYLIVHSSLELASMLCEKAKQIGLMEKGSVWIIPNEVAGLLDSVNSSVIFNMQGVVGFKTHFIEKSGAFRQFKFKFQRKFALEYPEEDNINPSIFALQTYDATKAIAKAANKSSQGKFERLSGKTFSKNGQLLQSPTFNIINVIGKSYREMAFWSPALGFSKNIVSHNKVMEISTNNDDSNGVFKTVYWPGESQSVPKGHNNEERTLKIAIPSNGAFTQFVNVEYDQGNNEPTVTGFSISIFEAAVKRLPYILNYTFFPFNGSYDEMVDHVYNKTLDAAVGDTSIVAYRYHLVEFSQPYIESGLHMVVTEQPAKSKETWMFLAAFTKEMWLMMTAMHVFVGFVIWLIEREVNEDLRGFGSMLWFLVTVLFYAHREPIRRPLAQVVLTPWLFAIFIVTNSFTASLTSITISQVKPSVLDIQTLKERNSPIGCDGNSFIVKYLTVVLKFKPENIRKINSMSDYPAAFDNKEIEAAFFVAPHAKVFLAKYSCKGFIKAGNTYRLGGFGFVFPKGSSLASDISEALLSMIESGETEQLEKEMLDGIENGRKANCSDLKSKGKNNTSIGLLPYLGLFSICSTIAILGLSCYMICWLVKNVETLTSHTVLTLTQVWRIWRWTTNIFGRCCSKLQSRIMRRVSSCTETRNAEENVTNSQQIPVVVELVDTVLAAHAS* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4009 815 SUPERFAMILY Periplasmic binding protein-like II 347 681 - -
Psa3g4009 815 Gene3D - 345 472 - -
Psa3g4009 815 PANTHER GLUTAMATE RECEPTOR 1 775 - -
Psa3g4009 815 SMART GluR_14 351 686 IPR001320 GO:0015276|GO:0016020
Psa3g4009 815 Pfam Bacterial extracellular solute-binding proteins, family 3 376 681 IPR001638 -
Psa3g4009 815 Gene3D - 558 647 - -
Psa3g4009 815 Pfam Receptor family ligand binding region 7 273 IPR001828 -
Psa3g4009 815 CDD GluR_Plant 350 684 - -
Psa3g4009 815 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 775 - -
Psa3g4009 815 Gene3D - 63 236 - -
Psa3g4009 815 Gene3D - 648 681 - -
Psa3g4009 815 Pfam Ligand-gated ion channel 682 720 IPR001320 GO:0015276|GO:0016020
Psa3g4009 815 SUPERFAMILY Periplasmic binding protein-like I 2 344 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4009 Psa-Chr3 372099258 372102199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4009 1 765 Ion Channels AT2G29100 31.327 4.23e-110 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4009 - - mtr:MTR_5g059920 1239.94