Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3980 ATGCTGTTGGAGGGGCATATTGATCTTGGAATCAAATATGATCCATCTACTGGTATCTATGGTATGGACTTTTTTGTCGTCTTGGAGCGTCCTGGTTATCGTGTGGGTCGTCGCCGTAGGTGCAAAGCGCGTGTCGGAATCCAACACCGTGTTACCAAGGATGATGCCATGAAATGGTTCCAAGTGAAGACAACCCAGGCCAAGAGCAGACACTCCAATGGACAAGGAAGGTGGCCTGCCAAATTTGCTAAATTAATCCTTGATTTGCTCAAGAATGCAGAGAGCAATGCCGAAGTCAAAGGATTGGATGTTGATGCTCTATATATTTCTCATATCCAAGTCAATAAAGCACAGAAGCAAAGACGCCGAACATACAGAGCTCATGGAAGAATCAACCCTTACATGTCATCCCCATGCCACATAGAGTTGGTACTATCTGAAAAGGAAGAACCTGTCAAGAAGGAGCCTGAGACCCTGGCTTCTAGCAAGAAGGAGGGCTTAATCCACCAGTGGCACTTTTGTGCTTGA 528 0.4602 MLLEGHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKTTQAKSRHSNGQGRWPAKFAKLILDLLKNAESNAEVKGLDVDALYISHIQVNKAQKQRRRTYRAHGRINPYMSSPCHIELVLSEKEEPVKKEPETLASSKKEGLIHQWHFCA* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3980 175 PANTHER RIBOSOMAL PROTEIN L17A 63 161 - -
Psa3g3980 175 Gene3D - 1 71 IPR022803 -
Psa3g3980 175 TIGRFAM uL22_arch_euk: ribosomal protein uL22 58 148 IPR005721 GO:0003735|GO:0006412|GO:0015934
Psa3g3980 175 Pfam Ribosomal protein L22p/L17e 75 146 IPR001063 GO:0003735|GO:0005840|GO:0006412
Psa3g3980 175 SUPERFAMILY Ribosomal protein L22 61 148 IPR036394 GO:0003735|GO:0005840|GO:0006412
Psa3g3980 175 PANTHER 60S RIBOSOMAL PROTEIN L17 63 161 IPR005721 GO:0003735|GO:0006412|GO:0015934
Psa3g3980 175 ProSitePatterns Ribosomal protein L22 signature. 121 145 IPR018260 GO:0003735|GO:0005840|GO:0006412
Psa3g3980 175 CDD Ribosomal_L22 79 145 IPR001063 GO:0003735|GO:0005840|GO:0006412
Psa3g3980 175 SUPERFAMILY RL5-like 3 64 IPR022803 -
Psa3g3980 175 Gene3D Ribosomal protein L22/L17 76 170 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3980 Psa-Chr3 368265529 368266695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3980 63 166 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 83.810 3.53e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3980 K02880 - gmx:100800781 177.563