Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3965 ATGTTAAATGGAGGTGATCCTAAGGAAGATAAACCGCCCTCTTTTGTTGCCAAAGAAGATGATGTTGACATACTGGCATATGTGAACCAGATGGCAGAAGTTGCAGCTGCAGCTGGGCAGGCGTTGTCAGCATTTGAGAGTGAGCTACGCCCTATTGATCGATATGCCATTCATTTTCTAGAGCTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAAGATTGAGGATACTGAATGGGAATTGGATCGCATTGAAATGTATAAGGAGGAGATGGAAGCCGAAATTGACGAAGATGAGGAGCCTCTTGGATATGAAAGCTGGGATGCATATTTTGCAACAACGGCTTATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAATTAATGGAAGAACTTGAATATGAAGCTAAATTGAAAGAGGAAGCTAAAGAAGAGAAAAACAGGACTCAAACACCAAATGATTCAAAGCTCAAGCCTAAAAAGAAACCCAAGAAAGAAAAGTTCAAATCTCTGAAGAAAGGATCTTTAACCTCTAGCTTAAGAACTATGAAAGATGAGCGACGAGCAGTGCCAATGGCCATAGATGATGATGCTGCCACTAGTCTTGATTTTGTGTCTCCAAGTTCAAGTAGACATAAAAAACGCAAGAAGTCTAAATTAACAACTGATGGTGAAGAAGAAAAGAGATTTAAGAAGTCCAAAAAGTACAAGAGGGATCCTCTTGACATTTATGATTCAGATTTGGAATCCATATCAATAGATATGCTGGATGAACATGCAAATTTAGATCCATCTGATTTTTGGATGCCTCAGGAGGATGCAATATTATGTGCAATTGTTCATGAATATGATCCTAATTGGAGCTTTGTTAGTGAAATGCTTTATGGCATTCCTGCTCTGATCAATGCTACCATAGCTCCTTCAAGAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAAGAGAATGCTATGTGCGCTTTAGCAAATATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTCGGTCAAAGCCTCGAGTCATGCTCTTCCCCTACACAAATTGCCGACACTTTAGGAGCTATAGCATCAACTCTTATAATATATGATAACAAGGCCGAATCTACCAAACCGTCAGATCCTTTGGTGGTTGAAGAGACTCTATGGCGAGCACTTCAGGGTCGTGAAGGAGTTCAACTTTTGATATCTCTTATTGGCCTTTCATCAGAACAACAGCAAGAATGTGCAGTTGCATTGCTTTGCCTTTTATCCAATGAAAATGATGAAAGTAAATGGGTAATTACTGCTGCTGGTGGTATACCTCCGCTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCGGCAAGAATCCTTAAGAATTTGTGTAATTATAGTGAGGATATACGTGCCTGTGTTGAAAGCGCTAATGCAGTTCCTGCATTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGTGATCTACCTGAGTCCAAGGTTTATGTTTTAGATGCTTTGAGGAGTATGCTTTCTGTTGTTTCTCTTAGTGACCTTCTACGTGATGGCAGTGCTGCGGGTGATGCAATCAATACAATGATAAAGTTATTAAGCTCCACAAAGGAAGAAACTCAGGCAAAGTCAACATCAGTTTTGTCAGGAATTTTTGAAACGAGGAAAGATGTGCGCGAAAGCAACATTGCTGTGAAAACTCTTTGGGAAGTTGATTATGCTGTAAATGATTGTGTGAACCGTGCTGGCACTGTTCTTGCATTAGTCTCCTCTTTAGAATCTTCTATCAACGAATCTGTTTCCACATCAGAGGCTCTAGAAGCACTTGCCATTCTTTCCAGGTCAGAAGAGACTGGTGCAAATGTTAAACCAACATGTGCAATTTTAGCCAAATTCCCTCAAAACATAATCCCAATGTGGAAGAAGCTGAGTGAATCAAACGAGATGATAGATGAAAACTGGCTTTGGTTTTATTGGCAGCAAATTCTTCGAGCTGTCAATACAATTCACGAGGAACGTATTGTGCCCTCTAACTTGAAGCCTGCTAACTTCCTCCAAGCCAAGGAAGTAGCACAAGCCTTCCACTTTGCTTCATAA 2127 0.4071 MLNGGDPKEDKPPSFVAKEDDVDILAYVNQMAEVAAAAGQALSAFESELRPIDRYAIHFLELWDPIIDKAALESEVKIEDTEWELDRIEMYKEEMEAEIDEDEEPLGYESWDAYFATTAYRQQVEALAQHQLMEELEYEAKLKEEAKEEKNRTQTPNDSKLKPKKKPKKEKFKSLKKGSLTSSLRTMKDERRAVPMAIDDDAATSLDFVSPSSSRHKKRKKSKLTTDGEEEKRFKKSKKYKRDPLDIYDSDLESISIDMLDEHANLDPSDFWMPQEDAILCAIVHEYDPNWSFVSEMLYGIPALINATIAPSREFMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQIADTLGAIASTLIIYDNKAESTKPSDPLVVEETLWRALQGREGVQLLISLIGLSSEQQQECAVALLCLLSNENDESKWVITAAGGIPPLVQILETGSAKAKEDSARILKNLCNYSEDIRACVESANAVPALLWLLKNGSPNGDLPESKVYVLDALRSMLSVVSLSDLLRDGSAAGDAINTMIKLLSSTKEETQAKSTSVLSGIFETRKDVRESNIAVKTLWEVDYAVNDCVNRAGTVLALVSSLESSINESVSTSEALEALAILSRSEETGANVKPTCAILAKFPQNIIPMWKKLSESNEMIDENWLWFYWQQILRAVNTIHEERIVPSNLKPANFLQAKEVAQAFHFAS* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3965 708 Pfam Armadillo/beta-catenin-like repeat 431 470 IPR000225 GO:0005515
Psa3g3965 708 Gene3D Transferase(Phosphotransferase) domain 1 645 703 - -
Psa3g3965 708 SUPERFAMILY ARM repeat 399 602 IPR016024 -
Psa3g3965 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 484 IPR000225 GO:0005515
Psa3g3965 708 MobiDBLite consensus disorder prediction 145 189 - -
Psa3g3965 708 Gene3D - 386 644 IPR011989 -
Psa3g3965 708 MobiDBLite consensus disorder prediction 223 237 - -
Psa3g3965 708 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 580 662 - -
Psa3g3965 708 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 501 578 - -
Psa3g3965 708 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 300 392 - -
Psa3g3965 708 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 389 500 - -
Psa3g3965 708 SMART arm_5 296 337 IPR000225 GO:0005515
Psa3g3965 708 SMART arm_5 473 518 IPR000225 GO:0005515
Psa3g3965 708 SMART arm_5 431 471 IPR000225 GO:0005515
Psa3g3965 708 MobiDBLite consensus disorder prediction 208 237 - -
Psa3g3965 708 MobiDBLite consensus disorder prediction 145 163 - -
Psa3g3965 708 Coils Coil 78 98 - -
Psa3g3965 708 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 389 500 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Psa3g3965 708 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 300 392 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Psa3g3965 708 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 580 662 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Psa3g3965 708 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 501 578 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Psa3g3965 708 SUPERFAMILY Protein kinase-like (PK-like) 653 696 IPR011009 -
Psa3g3965 708 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3965 Psa-Chr3 366992204 366995501 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3965 405 558 U-box Gene Family AT2G28830 32.468 1.91e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3965 - - pmum:103332662 379.793