Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3957 ATGGCACCAAAGCGCGGTGGAAAAGCACCAGTCGCAGCTGCGAAGAAGAAGCAGCCAGAGAAAGTGGTGAACCCGCTTTTCGAGAAGAGGCCAAAGCAATTCGGGATCGGTGGTGCTTTGCCTCCTAAGAGGGATTTGACACGTTTTGTGAAATGGCCTAAGAATGTTCAAATCCAGAGGAAGAAGAGGATCCTCAAGCAGAGGTTGAAGGTTCCACCTGCACTCAACCAGTTCACCAAGACACTCGATAAAAACCTTGCTACAAACCTATTTAAGATGCTCCTTAAGTATAGGCCTGAGGACAAAACTGAGAAGAAAGAGCGTCTATTGAAAAGGGCTCAAGCTGAATCTGATGGCAAAACAGTTGAAACTAAGAAGCCTATTAATGTGAAATATGGTCTCAACCATGTTACATATCTTATTGAGCAGAACAAGGCACAACTTGTTGTGATTGCTCATGATGTCGACCCAATTGAGCTTGTCGTATGGCTCCCAGCTTTGTGCAGGAAGATGGAAATTCCCTACTGCATTGTCAAGGGCAAAGCACGCCTGGGAACTATTGTTCACAAGAAAACTGCTGCCGTTTTGTGCTTGACAACTGTTAAGAATGAAGACAAAATGGAATTTAGCAGAATCCTAGAAGCCATTAAGGCAAACTTCAACGATAAGTACGAAGAATACAGGAAGAAGTGGGGTGGCGGTATCATGGGTTCTAAATCTCAAGCAAAAACCAAGGCGAAGGAGAGACTCATTGCCAAGGAAGCTGCTCAAAGAATGACCTAG 783 0.447 MAPKRGGKAPVAAAKKKQPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKTEKKERLLKRAQAESDGKTVETKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTIVHKKTAAVLCLTTVKNEDKMEFSRILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRMT* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3957 260 PRINTS Ribosomal protein L7A/RS6 family signature 130 144 IPR018492 -
Psa3g3957 260 PRINTS Ribosomal protein L7A/RS6 family signature 149 162 IPR018492 -
Psa3g3957 260 PRINTS Ribosomal protein L7A/RS6 family signature 165 175 IPR018492 -
Psa3g3957 260 PRINTS Ribosomal protein L7A/RS6 family signature 175 189 IPR018492 -
Psa3g3957 260 ProSitePatterns Ribosomal protein L7Ae signature. 168 185 IPR004037 GO:0042254|GO:1990904
Psa3g3957 260 PANTHER BNAA03G47020D PROTEIN 2 258 - -
Psa3g3957 260 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 120 208 IPR004038 -
Psa3g3957 260 Gene3D - 52 235 IPR029064 -
Psa3g3957 260 SUPERFAMILY L30e-like 92 224 IPR029064 -
Psa3g3957 260 PRINTS Ribosomal protein L7A family signature 31 48 IPR001921 -
Psa3g3957 260 PRINTS Ribosomal protein L7A family signature 48 65 IPR001921 -
Psa3g3957 260 PRINTS Ribosomal protein L7A family signature 68 87 IPR001921 -
Psa3g3957 260 PRINTS Ribosomal protein L7A family signature 92 105 IPR001921 -
Psa3g3957 260 PRINTS Ribosomal protein L7A family signature 126 146 IPR001921 -
Psa3g3957 260 PRINTS Ribosomal protein L7A family signature 187 211 IPR001921 -
Psa3g3957 260 PRINTS Ribosomal protein L7A family signature 219 239 IPR001921 -
Psa3g3957 260 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3957 Psa-Chr3 366254754 366257447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3957 1 260 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 83.846 3.25e-165 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3957 K02936 - gmx:100797399 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3957 3 366254754 366257447 Psa3g3957 3 366254754 366257447 ECH