Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3947 ATGACAGGAAGACAAAATCCAACTTATGCCACTGGACTCCTCTTGGCACGTCGGGTTCTCAAGACACTTGAGATGGATGAAGAGTATGAGGGAAATGTTGAGGCTACTGGAGAGGATTATTCTGTGGAGCCAGGTGATTCCAGGAGGCCATTCCGTGCTCTTCTTGATGTTGGTCTTGTTAAGACCACAACTGGAAACCGTGTCTTTGGTGCTCTGAAGGGTGCATTGGATGGTGGTTCGGATATTCCTCACAGTGACAAGAGGTTTGCTGGTTTTGATAAGGAAAAGCAGGAGCTTGATGCTGAGGTTCACCGCAAATATATCTTTGGTGGACATGTTTTTGCCTATATGAAGATTTGGATTGAAGACGAACCAGAGAAATATCAGACTCATTTCAGTGAGTATATTAAGAAGGGAATCGAAGCTGATGGACTTGAAGAGCTTTACAAGAAGGTTGAGAGAGGGAGACACGAGGTTGAGAGCGAAGGAGAGATGCGTTTGAGCGGCTGTGAGAGAGGGTTTGTTAGCGAGAGAGATTGA 540 0.4574 MTGRQNPTYATGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPGDSRRPFRALLDVGLVKTTTGNRVFGALKGALDGGSDIPHSDKRFAGFDKEKQELDAEVHRKYIFGGHVFAYMKIWIEDEPEKYQTHFSEYIKKGIEADGLEELYKKVERGRHEVESEGEMRLSGCERGFVSERD* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3947 179 Gene3D - 4 163 - -
Psa3g3947 179 Coils Coil 142 162 - -
Psa3g3947 179 PANTHER RIBOSOMAL PROTEIN L5-RELATED 8 153 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa3g3947 179 PANTHER PROTEIN L5, PUTATIVE-RELATED 8 153 - -
Psa3g3947 179 SUPERFAMILY Translational machinery components 6 154 - -
Psa3g3947 179 PRINTS Ribosomal protein L5 signature 54 73 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa3g3947 179 PRINTS Ribosomal protein L5 signature 74 93 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa3g3947 179 PRINTS Ribosomal protein L5 signature 116 136 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa3g3947 179 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 8 85 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3947 Psa-Chr3 365398087 365399188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3947 8 152 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 81.379 2.23e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3947 K02932 - gmx:100786189 268.47