Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3939 ATGGCTACTTGCCGGTGCTTGTGGACATGGAAAAGTTCTTGGCCTGCCTCTAATCAATTCAATGATATCAACATGAAGCCAATTTATCTTCCAAGAAGGCAAAGGATGTGGCTCTTGTTATCAGGTCTAACAATTTATCCAATAGTTGCATGCAACTATCCTGGAGTATCGATAACTTTTCGTGTGGATCCTGGATCTAACCAACAATATTTTGCTATTGTAATTGAATACGAAGATGGAGATGGTGATCTCAAAACAATTGAGCTCAAAGAAGGACTTGACTCAGCAAATTGGGAAGCCATGCAACGATCATGGGTGCAGTTTGGAAACTTGACAAAGGAGCATCACTAA 351 0.4046 MATCRCLWTWKSSWPASNQFNDINMKPIYLPRRQRMWLLLSGLTIYPIVACNYPGVSITFRVDPGSNQQYFAIVIEYEDGDGDLKTIELKEGLDSANWEAMQRSWVQFGNLTKEHH* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3939 116 Gene3D - 50 115 IPR036749 -
Psa3g3939 116 PRINTS Major pollen allergen Lol pI signature 60 75 IPR005795 GO:0005576|GO:0019953
Psa3g3939 116 PRINTS Major pollen allergen Lol pI signature 76 91 IPR005795 GO:0005576|GO:0019953
Psa3g3939 116 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 69 105 IPR007117 -
Psa3g3939 116 PANTHER EXPANSIN-B2-RELATED 46 106 - -
Psa3g3939 116 Pfam Expansin C-terminal domain 58 106 IPR007117 -
Psa3g3939 116 PANTHER EXPANSIN-B3 46 106 - -
Psa3g3939 116 SUPERFAMILY PHL pollen allergen 57 107 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3939 Psa-Chr3 364603148 364604010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3939 45 105 Expansin Gene Family AT1G65680 49.180 2.66e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3939 - - gmx:100777550 93.2041