Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3938 ATGTGTTGTGATAATATGGCTTTTAGTTTAGGACATGCATTCTCTCATATACTTATCTTTGTAGGTTCACTCTCAATACTATTAGGTACCCCTTCCTCTTGTTTTAAACCCAAAAAACTTGTTACTGTTACTTTGAACTTGTCATCTTATTTAGATTCTTCATCTTCAATGGCTACTTGGTATGGACCTCCGGACGGTGATGGAAGTGAAGGTGGTGCTTGTGGATATGGAAAAGCTGTTGGCCTGCCTCCAATCAATTCAATGATATCAGCAGGAAGCCAATTCATCTTCCAAGAAGGCAAAGGATGTGGCTCTTGTTATCAGATTAAGTGCACTGGAAATTCCGCATGCTCAACAAAACCTGTGACAGTAGTTATCACTGATTTGTGTCCTGAGTGTAGTCATTATTTTGATTTGAGTGGCAAAGCTTTTAGTTCCATGGCAATTTCAGGTCAAGCGGACAAACTACGAACAGCTGGGAAAGTAACAGTTCAATATCAAAGAGTTGCATGCAACTATCCTGGAGTATCAATAACTTTTCGTGTAGATTCTGGATCTAACCAACAATATTTTGCTACTGTAATTGAATACGAAGATGGAGATGGCGATCTCAAAACAGTTGAACTCAAAGAAGGACCTGGCTCAGCAAACTGGGAAGCCATGCAACGATCATGGGGTGCTGTTTGGAAACTTGATAAAGGGGCATCACTAAGAGCACCATTTTCTATTAGGCTAACTACAATTGAATCTGGCAAAGTATTTATCGCTAATAATGTGATCCCTGTAGGTTGGAAGCCTGGTCAAACTTTTAGAGCAGTTGGGAATTTTAATTAA 834 0.3957 MCCDNMAFSLGHAFSHILIFVGSLSILLGTPSSCFKPKKLVTVTLNLSSYLDSSSSMATWYGPPDGDGSEGGACGYGKAVGLPPINSMISAGSQFIFQEGKGCGSCYQIKCTGNSACSTKPVTVVITDLCPECSHYFDLSGKAFSSMAISGQADKLRTAGKVTVQYQRVACNYPGVSITFRVDSGSNQQYFATVIEYEDGDGDLKTVELKEGPGSANWEAMQRSWGAVWKLDKGASLRAPFSIRLTTIESGKVFIANNVIPVGWKPGQTFRAVGNFN* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3938 277 SUPERFAMILY Barwin-like endoglucanases 44 175 IPR036908 -
Psa3g3938 277 Gene3D - 40 171 IPR036908 -
Psa3g3938 277 PRINTS Major pollen allergen Lol pI signature 91 102 IPR005795 GO:0005576|GO:0019953
Psa3g3938 277 PRINTS Major pollen allergen Lol pI signature 111 121 IPR005795 GO:0005576|GO:0019953
Psa3g3938 277 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Psa3g3938 277 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Psa3g3938 277 PRINTS Major pollen allergen Lol pI signature 196 211 IPR005795 GO:0005576|GO:0019953
Psa3g3938 277 PRINTS Major pollen allergen Lol pI signature 227 244 IPR005795 GO:0005576|GO:0019953
Psa3g3938 277 Gene3D - 172 272 IPR036749 -
Psa3g3938 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 272 IPR007117 -
Psa3g3938 277 PANTHER EXPANSIN-B2-RELATED 18 276 - -
Psa3g3938 277 SMART dpbb_1 89 166 IPR007112 -
Psa3g3938 277 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Psa3g3938 277 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Psa3g3938 277 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Psa3g3938 277 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Psa3g3938 277 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Psa3g3938 277 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Psa3g3938 277 PANTHER EXPANSIN-B3 18 276 - -
Psa3g3938 277 Pfam Expansin C-terminal domain 178 261 IPR007117 -
Psa3g3938 277 Pfam Lytic transglycolase 90 166 IPR009009 -
Psa3g3938 277 SUPERFAMILY PHL pollen allergen 177 271 IPR036749 -
Psa3g3938 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 176 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3938 Psa-Chr3 364594870 364596189 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3938 32 276 Expansin Gene Family AT1G65680 52.419 1.78e-92 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3938 - - gmx:548090 367.466