Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3925 ATGACAACAAAATATTGCTACAAAGATTTGGTTCCTTTTGGTGCCATGGTAACCATGGAATGCATCAACGTTGCTTTGAACACTCTCTTCAAAGCTGCTACCTTAAAAGGAATGAGTTACCATGTTTTTGTTGTTTATGCTTATGCTGTTGCTGCTTTTGTTCTTCTTCCTGCACCCTTTATCTCCAAAAGATCAAGAGTTCTTCCTCCTTTGAGTAAACCTATATTATACAAAATTGGTCTTCTTGGGTTGATAGGAAGTTCATCTCAGATAATGGGTTATACTGGTATTAGTTTGAGTTCTCCAACTCTTTCATCAGCTATTAGCAACTTGGTGCCAGCTTTTACCTTCTTGCTTGCCATCATTTTCAGGATGGAAAGAGTAGCCATAAGAAGTTCAAGTAGTCAAGCCAAAGTGTTGGGGACCATAGTGTCTATATCAGGAGCATTTATAGTGACACTTTACATAGGACCGCCAATCATCGTTGCGCATAGACATTCACTTTCACTTCATCAAACTCTTAAATCTTCAGATCAAAGTTGGGCCGTTGGTGGCCTTCTACTTACAGCTGAGTATATATTGGTTCCCATGTGGTACATTGTGCAGGTTCAAATTATGAAGGTGTATCCGGATGAACTAACAGTGATCTTCTATTACAACTTAAGTGTGAGCATTATTGCTGCAATTGTAGGAGTGATAAGTGAGCCAAATGCAAGTGCTTGGAAAATAGGACTTGATACATCACTTACTTCCATCCTCTGCTCGGGATTTTTTGGATCATTCTTGAACAATACAGTTCACGCATATGTACTACGTATAAAGGGAGCTGTATATGTTGCAATGTTCAAACCACTCTCAATTGTCATAGCTGTTGCCATGGGAGTAGTGTTCCTTGGTGATACTCTCCATCTTGGAAGTTTAGTTGGAGCCACAATAATATCAATTGGGTTTTATACTGTAATGTGGGGTAAAGCAACGGAAGAAGAGGTTGTTGAAGATGTCCCTAGCCACGAAACACCAACTACACAGAATGTTCCTCTCTTGCAAGGCTATGAAGCTGATAGAGTTGAAAAGAAAATGGATGCAACTGGTGATGGAGCAGCAGCAGACCGCAAGTCACGGGTGGAGCAAATACGCCAGCTGATTCAAGAGCAACCGGGTCGGAATCACGGAGGATCCGACGAAGAAGATGAGAGAAGCGGGAAGGAGCACGATATCGCACGAAGGTTGGAAATTCCGATTTTCAAAGGAGAGGATGCGTATGGGTGGCTCGTTCGGGTTGAGAGGTATTTTCACCTCAATGGGGTGAGGATGCGTGACAAGCTAGATGCAGTTGTGCTTGCCATGGAAGACAAAGCTTTGAACTGGTATCAATGGTGGGAGGAGCAGGCGCCGTTGAAGACTTGGGAAGAGTTCAAAGTGGCTGTGATGAGAAGGTTCCAACCTGGGTTACTGCACAATCCTTTGGGACCCTTGTTAAGCCTGAAACAGAGAGGGGCTTTACTCATTGAGGAGAAAAATGATGTGCTGCATAAGAAGGGTGGCTCTTGGAGAGATAGACGAGGACCCTTAAAACTCAAAGATCCTGCAGACTTTGGAGGATTTAAGAAGGAAGGGGGAAATGAGAAATACAAGGGTAGGAGATTGAATCCTGCAGAGCTGGAAGAGAGGGGCAAAAAAGGATTGTGTTTTAAGTGTGGAGACAAGTGGAATAGGGAGCATATCCGTAAGTTCAAGCATATGAGCTTGAAATTGTGTGAGAATAGTAGTGATGAAGAAGAAGAAACAGGGGGAATAGGGGAGAAGAAGCTGGTAACCCTAATTGATTTAGGAGCAACAAGTAACTTTATTGATGCCAAACTAGTAGAACAGATGGGATTGAAGTTGGTAGAAACTCCCCCTTATGTAATTGAGGTGGGAAATGGTGAAAGAGTCGAATATCAGAGAATCTGTGAAGGGTTGAGATTTAAGATGCAGGGGGTGGAATTTAACCAACATTTCTTTTTGATGGAGTTAGGAGGGACTGATATGGTGTTGGGGATGGATTGGTTGGCCAGTTTAGGTAATATACTTCGTTTGAAACGCCTCAATTCGGACAAATGGGCGTCTGAAGGACAGAAGCATAATATACAGGGTGATCCGATTTTGTGCACCAAACAAGCTTCCATGAAAGCTATGATAAAAGCTTTGCATAATGAAGGCATGGGATTTTTCCTACAGACTCTACAGGCAGAGGAGCAGTCCCCGAAACTGACAGAATGGGAAGAAGTGTTGAAATCTTTTGAGAAGGTTTTCAACCTCCCTGCTGGGTTACCTCCTATAAGGAAGCATGATCATGCGATTACGCTCAAGGATGAAGCTGATATACCTAACCTCAGACCTTACAGGGCTCAACAGAAATCTGTATATGAGAGAGAGCTGATGGTTATAGTCATTGCAATTCAAAAGTGGAGGCCTTATTTACTTGGAAGGCATTTCAAAATTCACACAGATCAAAAAAGCCTTAAGTTTATCACTGGGCAAAGAATCATGGGAGGAGAACAGCAGAAGTGGTTATCCAAACTTTTAGGGTTTGACTTTGAAGTGATGTACAAACCAGGAAAAGAAAACAGTGTTGCTGATTCACTGTCTAGACAGATGCAGTATGCCCACATCACCACCATTCAGTGTGAAGCCTGGGAAGGGTTAGAAGAGGAGATTAGGAAGGATGATAAATTGACTTCATAA 2727 0.425 MTTKYCYKDLVPFGAMVTMECINVALNTLFKAATLKGMSYHVFVVYAYAVAAFVLLPAPFISKRSRVLPPLSKPILYKIGLLGLIGSSSQIMGYTGISLSSPTLSSAISNLVPAFTFLLAIIFRMERVAIRSSSSQAKVLGTIVSISGAFIVTLYIGPPIIVAHRHSLSLHQTLKSSDQSWAVGGLLLTAEYILVPMWYIVQVQIMKVYPDELTVIFYYNLSVSIIAAIVGVISEPNASAWKIGLDTSLTSILCSGFFGSFLNNTVHAYVLRIKGAVYVAMFKPLSIVIAVAMGVVFLGDTLHLGSLVGATIISIGFYTVMWGKATEEEVVEDVPSHETPTTQNVPLLQGYEADRVEKKMDATGDGAAADRKSRVEQIRQLIQEQPGRNHGGSDEEDERSGKEHDIARRLEIPIFKGEDAYGWLVRVERYFHLNGVRMRDKLDAVVLAMEDKALNWYQWWEEQAPLKTWEEFKVAVMRRFQPGLLHNPLGPLLSLKQRGALLIEEKNDVLHKKGGSWRDRRGPLKLKDPADFGGFKKEGGNEKYKGRRLNPAELEERGKKGLCFKCGDKWNREHIRKFKHMSLKLCENSSDEEEETGGIGEKKLVTLIDLGATSNFIDAKLVEQMGLKLVETPPYVIEVGNGERVEYQRICEGLRFKMQGVEFNQHFFLMELGGTDMVLGMDWLASLGNILRLKRLNSDKWASEGQKHNIQGDPILCTKQASMKAMIKALHNEGMGFFLQTLQAEEQSPKLTEWEEVLKSFEKVFNLPAGLPPIRKHDHAITLKDEADIPNLRPYRAQQKSVYERELMVIVIAIQKWRPYLLGRHFKIHTDQKSLKFITGQRIMGGEQQKWLSKLLGFDFEVMYKPGKENSVADSLSRQMQYAHITTIQCEAWEGLEEEIRKDDKLTS* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3925 908 Pfam Retroviral aspartyl protease 604 687 - -
Psa3g3925 908 CDD RNase_HI_RT_Ty3 797 878 - -
Psa3g3925 908 MobiDBLite consensus disorder prediction 389 403 - -
Psa3g3925 908 PANTHER WAT1-RELATED PROTEIN 9 346 - -
Psa3g3925 908 SUPERFAMILY Acid proteases 598 691 IPR021109 -
Psa3g3925 908 Pfam RNase H-like domain found in reverse transcriptase 798 857 IPR041373 -
Psa3g3925 908 CDD retropepsin_like 602 685 - -
Psa3g3925 908 SUPERFAMILY DNA/RNA polymerases 799 865 IPR043502 -
Psa3g3925 908 MobiDBLite consensus disorder prediction 381 403 - -
Psa3g3925 908 Gene3D Acid Proteases 596 698 IPR021109 -
Psa3g3925 908 SUPERFAMILY Multidrug resistance efflux transporter EmrE 239 325 - -
Psa3g3925 908 PANTHER WAT1-RELATED PROTEIN 9 346 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3925 Psa-Chr3 362741852 362749260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3925 1 354 Nodulin-like Gene Family AT3G28050 57.650 2.57e-132 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3925 - - gmx:100814137 524.242