Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3909 ATGATGTTCTATTTTGTCAATGTCCCTCCATCTCATTCTCTCGAGTCCTTCCACGAATTAGTTGCTGAGAATGGCGGCACTTTCTCAATGAATTTGAATAACTCAGTCACCCATTGTGTTGCAGCAGACAGCAAGGGGTTTAAATTTGAGGCAGCAAAACGTCGTGGTGATGTCATTTATTATACCTGGGTACTAGATTGCTATGCACAAAAGTATTCTCATCAATGCAAGCGAACAATAGAGATCAAATTGTGGATGTTGGATCCATGGTTGAAGCTGTTTCTGCTGAAGCCGGTGATGCACCTCTTCACGCCATCGAAAGCCTCTGCATGCGCTGTCATCAAAACGGAACTACAAGATTTTATTTACTTCAATTTCAGGAAGATTTTATTGTTGGTTTTTGAATGTCCTCATTGTGGTGAGAGGAACCATGAAGTGCAGTTTGCTGGGGAGACTCAACCACATGGTTGTTGTTACTCGTTAGAGATTCCAGCGGGTGAACAAAAGATGTTCAATCGACAAGTGTTAAAATCAGAATCTGCTACCGTTAAGATACCCAAACTTGAATTTGAGATTCCACCAGAGACACAACATGGTAGTCTGTCAACGGTTGAAGGGATATTAATGCGAGCTGTTGATGAACTTCAGGCCCTTCAAGAGGAACGCAGAAAACAGAATCTTCTTTCACGTGTATTATTGATGATCCTGCTGGAAACAGTCACATCGAAAATCCTTTTGCACCATCATCTGATCCATCATCTCACTATCAAGTTTTATGACCGAACACCTGAGCAACAAGTATTGTTGGGATATTCTACACAGGATGAAGGAACTCGTGATGAAGTGCTGGAAAGTGGAGAAGCAACGGCTTCTATGAGAACGAGTAGACAACCCCATGGGTCAGTTGGGGGAGCCGCTGGTCAACGAGCTATTGCACAAAGTAATAGTGCAGGAATCGCAGATGCCTTATTTCGATATAGTGCGCCAGAAGAGGACCCAATCCAGCTTCTGGATGATGTCATACGCCGCTTGAAATCTTTGAAACTCAAGGCTAGAGCTCTCGGTCTCACGCTTTGTAAATCATTTCAAGAACAACAAGCCATCATTCTGCACACATGTTGCAACAACCAAAGGTTTCAATGCAGCAACAATTGCAACAAAATGCCTCGAAGTCGTTGGCATCTCAGTCGCAGCAATCCCGCGACAGACAGATTGCATCTGGATGTTGGGCGCAATCGGCATAATCACTTCTGCCAACCATTTGTTCCCACATTACAGCAAACAAGAAATACTCCTGAAACAGGATTGCCTGCAATTGATTACAGGATATTTGATTCACTGGCAGACCCTCCTGAAACAAAGCAGAAGCATGTTGAAGATTTTAACAATCCTGCCAAGATTACTCCTACAGTATTGAAGATTTGGGCAAGGATACTGTGTGCAATTCCAAATTCTCGCCTTGTGGTAAAATGTAAACCATTTTGCTGTGATGGTGTGAGACAGAGGTTTCTTTCAACCCTAGAACAATTGGGACTGGAACCACTACGAGTTGATCTTCTGCCCCTTATTCTACTTAACCATGATCATATGATTCGTTGCATTTGTTCAAAACCTGCAACCTCAGTTCAACATGGACGTTTTGGCCTGACGCTGGACGTGTGGACCTCAAGTCAATCTGTAGGGTATGTGTTTATCACAGGACATTTTGTTGATAGCGATTGGAAGTTGCAGAGGAGAATTCTCAATGTTGTGATGGAACCATACCCTGATTCTGACTCTGCTCTCAGCCATGCTGTATCTGTCTGCATTTCTGATCGGAATTTGGAGGGAAGGTTATTTGCTATTACTTGTAATCAGCCACTGACTGAAGTCACCATTGAGAATCTCAGACCTCTACTCTCTGTGAAGAATCCACTTATCTTCAATGGCCAGTTGCTAATTGGAAGTTGCATCTCCCGTACTTTAAGCAATGTTGCATATGATTTGTTAGGCTCAGGACATGGTATTGTTAATAAAATCCGGGAAAGTGTGAAATATGTGAAGACTTCAGAATCACATAAGGAAAATTCATGGATCTTAAGCAACACCTTCAGATCGATAAGTACTGGAGAAGATCTGTCTGAGAATTACTCAAATGCAAAGTTTTATGTCATCAAATTTTTTACCATTGCAATCACAATTGTAGTTGTTACAGTGCCTGAAGGCCTACCTTTGGCTGTTACTTTAACCTTGACTTATGCAATGCGGAAAATGATGGCAGATAAAGCCTTGGTACGAAGACTGTCAGCCTGCGGAACTACGGGCTCTGCTACTACAATCTGTAGAGATAAGACAGGAACATTAACCTTAAATCAGATGACTGTTGTTGAGGCAATGGGGAGACAACAAGTCAACTACAATGCTCAGTCCACAATGGTAGAAACAAGGAATTACAAGTCTGACTTTCTCACAATCAATCGTCGCGGGCTAAGTTCCGTCAAAGATCAATCAGGTTTGACCGATGAATTCCTGTCAGCCTGGATCAATGCACGAGTATTTGATGTGTCGGATAATCATTATTCTGGAAGATTCCAAAGCTATGCAGCCTATAAAGTTAGCCTGGAGCAACACGATGAAGGCTCCCAGACCGTATTGCCAAAACCTCGAACCAAAGACAATGCTCTGCACCGTGGCCTTAGTTCGGCATCCATAACAGTGTCGGACAGTAGCCAATCTATGCTTCAACAATGTCACGGGCGCAAATTCATTTGTGATGAGTCGGGTAAACCAACCCTAGCAGTTATGCCAAAGACTATAGTTAGTGCTGATGAGTTCAATAAGTGTGAGAAACTCAGATGCAAGTTCAAGATTGCAGATCGGAACTTGGTCGAGAAATAA 2877 0.4272 MMFYFVNVPPSHSLESFHELVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRRGDVIYYTWVLDCYAQKYSHQCKRTIEIKLWMLDPWLKLFLLKPVMHLFTPSKASACAVIKTELQDFIYFNFRKILLLVFECPHCGERNHEVQFAGETQPHGCCYSLEIPAGEQKMFNRQVLKSESATVKIPKLEFEIPPETQHGSLSTVEGILMRAVDELQALQEERRKQNLLSRVLLMILLETVTSKILLHHHLIHHLTIKFYDRTPEQQVLLGYSTQDEGTRDEVLESGEATASMRTSRQPHGSVGGAAGQRAIAQSNSAGIADALFRYSAPEEDPIQLLDDVIRRLKSLKLKARALGLTLCKSFQEQQAIILHTCCNNQRFQCSNNCNKMPRSRWHLSRSNPATDRLHLDVGRNRHNHFCQPFVPTLQQTRNTPETGLPAIDYRIFDSLADPPETKQKHVEDFNNPAKITPTVLKIWARILCAIPNSRLVVKCKPFCCDGVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMIRCICSKPATSVQHGRFGLTLDVWTSSQSVGYVFITGHFVDSDWKLQRRILNVVMEPYPDSDSALSHAVSVCISDRNLEGRLFAITCNQPLTEVTIENLRPLLSVKNPLIFNGQLLIGSCISRTLSNVAYDLLGSGHGIVNKIRESVKYVKTSESHKENSWILSNTFRSISTGEDLSENYSNAKFYVIKFFTIAITIVVVTVPEGLPLAVTLTLTYAMRKMMADKALVRRLSACGTTGSATTICRDKTGTLTLNQMTVVEAMGRQQVNYNAQSTMVETRNYKSDFLTINRRGLSSVKDQSGLTDEFLSAWINARVFDVSDNHYSGRFQSYAAYKVSLEQHDEGSQTVLPKPRTKDNALHRGLSSASITVSDSSQSMLQQCHGRKFICDESGKPTLAVMPKTIVSADEFNKCEKLRCKFKIADRNLVEK* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3909 958 SUPERFAMILY BRCT domain 2 72 IPR036420 -
Psa3g3909 958 Gene3D ZPR1, A/B domain 152 245 IPR042451 -
Psa3g3909 958 PANTHER ZPR1 ZINC-FINGER DOMAIN PROTEIN 253 331 - -
Psa3g3909 958 PANTHER ZPR1 ZINC-FINGER DOMAIN PROTEIN 125 225 - -
Psa3g3909 958 Coils Coil 201 228 - -
Psa3g3909 958 Gene3D BRCT domain 1 87 IPR036420 -
Psa3g3909 958 Gene3D - 771 783 IPR023214 -
Psa3g3909 958 Pfam ZPR1 zinc-finger domain 125 224 IPR004457 GO:0008270
Psa3g3909 958 PANTHER ZINC FINGER PROTEIN ZPR1 253 331 IPR040141 -
Psa3g3909 958 PANTHER ZINC FINGER PROTEIN ZPR1 125 225 IPR040141 -
Psa3g3909 958 MobiDBLite consensus disorder prediction 287 308 - -
Psa3g3909 958 ProSitePatterns E1-E2 ATPases phosphorylation site. 776 782 IPR018303 -
Psa3g3909 958 SUPERFAMILY Calcium ATPase, transmembrane domain M 716 768 IPR023298 -
Psa3g3909 958 Pfam BRCT domain, a BRCA1 C-terminus domain 1 71 IPR001357 -
Psa3g3909 958 Gene3D - 784 815 IPR023299 GO:0000166
Psa3g3909 958 Gene3D - 716 770 - -
Psa3g3909 958 SMART zpr1 109 248 IPR004457 GO:0008270
Psa3g3909 958 Gene3D Glycogen Phosphorylase B; 459 535 - -
Psa3g3909 958 ProSiteProfiles BRCT domain profile. 1 71 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3909 Psa-Chr3 360775605 360780482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3909 125 331 C2H2 Transcription Factor Family AT5G22480 53.846 6.31e-68 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3909 K06874 - gmx:100798741 253.447