Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3906 ATGGACTTCGTTGGCAATGATTTAGGAAAAAGTCACATGAAAGAGCTAGATGAAATGCCTGCAGTTATGTCTGTGGCTAAGGAGGACGGAAATCTATCACAGGCTAAAATTTCGACAAGGTGCAACCAAGAGGAGCTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGAATTACGATCCAGAGGAGGAGGGACATCTACTGTAATTAATTCTTCAGATGCAGACGAAGAGACGATACTGCCTACAGCCAATGATGAAGTTGATTTAGCTGTTTTAGCTGCTTTGCCACACTCAATGCAACTTGATATTCTTTCTCAGCTTAAAGGCAAGAAAACAGGACCACTGAAGCAAGTTGACAACCAGACAAGACATGAAGTTAGTGATTGTGGCAAGGGTAAAGGGATTGTTTTCAATGAAACTGACCAGGTTGGGTGTAGCTCAAGATGTAACGTCAATGCGACATCCAGTAGTGACGACCAAAAAAGAATTGATGAAATGTTAGCTGCTTGTATTGATATGGAGGAAAATGCAAAGCTGGTAAATAATGTATCAAATTCCCTTGGGGGTTCTACCAATAAGGAAAAGGATGGTAACTATGACGAAGATGAAGAGATGATACTGCCAGCTATGCACAGTGAAGTTGATCCAGCTGTTCTGGCCTCTCTGCCTCCATCAATGCAACTGGATCTCCTTGTTCAGATGAGAGAGCGATTGATGGCAGAGAATAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTTCAAAGTTCTCTGAGCTTCAAATACAATCTTACCTTAAAACTGTAGCTTTCCGTCGCGAGATAAATGAAGTTCAGAAAGCTGCTGTCGGAGGAGGAGTAGGCGGGATACAGACTTCACGGATTGCATCTGAAGCAAACCGAGAGTATATATTCTCGTCATCCTTTTCCGGTGACAAACAAGGACTTACCTCCACCAGATTAGAAAGAAATGTTGAAGATACACAGCAAATGGAACGGGGAAGACATCCTTCACAGAATTTTATAAATAACATAGCAGCAGAAAATGTTTCTAATATTTCAGCTGGATTGGTTTGCGGTGAACCTTGCGAGCCTGTTGATGAAAGTATTGAGACATATCTAGATGAGAGGGGTCGAGTTCGAGTTAGTAGATCAAGAGCTATGGGGATGCGCATGACCCGTGATATACAAAGGAATTTGGATTTGATGAAGGAGATTCAGCATGACAGAACACATACAAGCAAGGTTGATAACATTGACACAGTGCCAAATACAGAAAATAGTCCATCAAAATGTTCTGGGAGTCAGCTTAGTGGTAAAACAAGAGAAGTGAATATTGACTTAGCTGGAGATAATGTGCAAAATGAGGAATTAATGCTTGGTAAGAATACTTCTATAGAAATATCCTTCGAGTATGATTGCAAGGATGAACTTGCAAGTGGCGGGGATGATATATTTGCAAGTTTAGTTGGAGGAATATCTATGGAACACTCTCATGCTGATGATACCGTGGTGAAAACACCTTGTGGTTCTGATTCAGATTGTGATTGGGAAGAAGGAATTCTTCAAGGCAAGAATACCATTTCTCCCGGATATAATAAAGTGGAATTGAAGTCTTCTGTTACAGGTGAGTATGATAATAATGAAAGTGAAGAAGAATGGGAAGACGGGGATTGTAATGGTACTAAAAGTACCTTATTTTGCCCATCTGAGCCGGGAATGTTGGCATCAAAAGGGCAGTTGGAAGAAGAGTCTGATTTGCAGGAAGCAATTAGGAGAAGTCTTGAGAGTACATGGGATGGAAAACTTAAATGCGTGCCATCTTTAGATGAACATTCAAATGCTTATGAGAAGAAATTGGATCCTAATTTAGAACATGGTGATAACAGTGAAGCTTTAGGAGACAAAAATGCAAACTACATGACTAGAAATGACCCAGAAACTTTCCATCAGTTAAAGTCATCTGTGACATTTAAATCCAAAAACTCAGATACATTGATTAACGAACCTAGCAAACTGGATGGACTCGATAATTCTGAAAATTCAATTTCAGATGGAAATGACATGATGATGGATGAGGTTCCAAATCTTATTGTTGCAGAGGAATTATTGGATAATCATAATGATGGTGGCATGTCCAAGGTTGATCCACTTGGTGTGACTGAAGAGGAGAAAAAGAAAAGTAATGATGATTCTGAAGCATTGAGTAATTCTTCTGACAATACAAAGGCTGCTATTCTTTCGATGGAGCCATCCGTGAAGGGAGCTAAAGAAGATCTTGATCTGGAGTTAAAATTGCCTTCAGTGAACAATGATGGAAATTTGTGTATGGAAAGGACTAGTAACCTCTCCCAAGAATCAATGATTACCCCAGGAGATTTTCCTGTACTATTGGATGAGGTTCAATTGAATGAAGAAATGGAAATTCTTGATAGGGAATATATGAACCTAGAAAAGGAGCAGAAGAAGTTTGAGCGTAATGCAGAGTCCGTTGACAGCGAATTATTCACTGAATGCCAGGAACTACTGCAAATGTTTGGCTTGCCATATATCATTGCCCCTATGGAAGCTGAGGCACAGTGTGCTTACTTAGAACTATCAAAACTGGTTGATGGGGTTGTGACTGACGACTCTGATGTCCTTTTATTTGGGGCACGCAGTGTTTACAAGAATATATTTGATGACCGCAAATACGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGATTGACCAGAGAAAAATTAATTCGCATGGCACTACTTCTTGGGAGTGACTATACTGAAGGTGTCAGTGGGATTGGTATTGTTAATGCTATTGAAGTTGTAACTGCATTCCCGGAGGAAGATGGGTTCCAGAAATTCCGGCAGTGGGTAGAGTCACCAGACCCCACCATCCTTGGAAGGTCGGATACAAAATCTGTATCTAAGAAAGGGTCAAAACTTGAAGAAAAGGAGTCGCCTGATTACATCCAAGAAAGAAAGCAAATTTTCATGGATAAGCATAGAAATGTTAGCAAGAACTGGCATATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTATTTATCTCCAGAAGTTGACAGGTCAACTGAGCCTTTCGCATGGGGAAAGCCAGATCAGCTCGTTCTTCGCAAAATGTGCTGGGAGAAATTTGGGTGGTCTAGCCAGAAAGCAGATGAATTGCTGTTACCTGTTTTAAAGCAGTACAACAAACATGCGACTCAACTGCGGTTGGAGGCGTTTTACAGTTTCAATGAAAAATTTGCAAAAATTCGTAGCAAGAGAATCAATAAAGCTCTAAAGGGAATAACTGGTAAGCCACCTTCAGAGGGAGCAGAGGAAGAGGAAGGTCTTGCAGGTAGGAAGAAATCAAAAAGAAAAGAGTCAATGGAAAGAAAAAATGACAGGGATGTTGTTGCTAAGCAACATACAAAGAAAAAGAAAATCAATGATGTTTCTACTTCTACACATGGTGCATCTGAGGTTGAAAAGTTACAGCCATGTATGCAAACAGAAGAAGAGCCTCGGAATAAAAGTGGAAGTGGGCGAGGAAGAGGTAAAGGTGTGAGAGTAAAAAGAAGCAGAGAGAAGAAAGGTCGTTGTTTTCAATCTGAAGCTGAAACATCATCAAGTAGTAGTGATATTGAGAATCATGAGCCGGGAGTACATATTGATGGGCCAACAGTTACAGAAGCTGTGCGAAGGTCAAAGCGATCTCGGAAACCTGTCAACTATTCCTTCGAGGACCTTGAAGTTGAAGATGCAGTTGATTCATTTGATCAGAATAATCAGACTTGCTTGCGCGGAGAGGGACTACAAGAAAAATCATCTTGCATTGATGATGCGAGTGTAGATAGTTTCAGCAGAGGGATTGAAAGCAATATGATAGAAATTCCTGTGAAGGATAACTTACCCGCAAACTATCTGGAGCCTGACACAGATGCTGGTGCAGCAACACCAAATACTCGCCCTTTAGATGACTATCTTGAAATGGGAGGTGGATTCTGTGCAGATGATAGTGAGATGGATAAGAACCATGATGCAATTGATGACATGAACACGGCTACAACAATCTCTCCAGGCTGTTCTGAATTTTTGGGTGAAACTGACCGTGATAAAAGTAGTTCAGATATATTGTTTTCTGGTACTGAAAAGGTTACAAGCGAGATACAAGATGGAGAAACATGTCACAAGTTAGACACAGTGCCAAATGACCACCTAAATGCTGGCATAAGAGTGTTGACACCAGAGAATGCTCATCACAATAGTGAGAGCTCTGAGGTAGCTTTTAGCGCTATGCCTTTTTTGAGGAAAAAAAGAAAGAGATGA 4350 0.4055 MDFVGNDLGKSHMKELDEMPAVMSVAKEDGNLSQAKISTRCNQEELDEMLAASIAAEENELRSRGGGTSTVINSSDADEETILPTANDEVDLAVLAALPHSMQLDILSQLKGKKTGPLKQVDNQTRHEVSDCGKGKGIVFNETDQVGCSSRCNVNATSSSDDQKRIDEMLAACIDMEENAKLVNNVSNSLGGSTNKEKDGNYDEDEEMILPAMHSEVDPAVLASLPPSMQLDLLVQMRERLMAENRQKYQKVKKDPSKFSELQIQSYLKTVAFRREINEVQKAAVGGGVGGIQTSRIASEANREYIFSSSFSGDKQGLTSTRLERNVEDTQQMERGRHPSQNFINNIAAENVSNISAGLVCGEPCEPVDESIETYLDERGRVRVSRSRAMGMRMTRDIQRNLDLMKEIQHDRTHTSKVDNIDTVPNTENSPSKCSGSQLSGKTREVNIDLAGDNVQNEELMLGKNTSIEISFEYDCKDELASGGDDIFASLVGGISMEHSHADDTVVKTPCGSDSDCDWEEGILQGKNTISPGYNKVELKSSVTGEYDNNESEEEWEDGDCNGTKSTLFCPSEPGMLASKGQLEEESDLQEAIRRSLESTWDGKLKCVPSLDEHSNAYEKKLDPNLEHGDNSEALGDKNANYMTRNDPETFHQLKSSVTFKSKNSDTLINEPSKLDGLDNSENSISDGNDMMMDEVPNLIVAEELLDNHNDGGMSKVDPLGVTEEEKKKSNDDSEALSNSSDNTKAAILSMEPSVKGAKEDLDLELKLPSVNNDGNLCMERTSNLSQESMITPGDFPVLLDEVQLNEEMEILDREYMNLEKEQKKFERNAESVDSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELSKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVTAFPEEDGFQKFRQWVESPDPTILGRSDTKSVSKKGSKLEEKESPDYIQERKQIFMDKHRNVSKNWHIPSSFPSETVISAYLSPEVDRSTEPFAWGKPDQLVLRKMCWEKFGWSSQKADELLLPVLKQYNKHATQLRLEAFYSFNEKFAKIRSKRINKALKGITGKPPSEGAEEEEGLAGRKKSKRKESMERKNDRDVVAKQHTKKKKINDVSTSTHGASEVEKLQPCMQTEEEPRNKSGSGRGRGKGVRVKRSREKKGRCFQSEAETSSSSSDIENHEPGVHIDGPTVTEAVRRSKRSRKPVNYSFEDLEVEDAVDSFDQNNQTCLRGEGLQEKSSCIDDASVDSFSRGIESNMIEIPVKDNLPANYLEPDTDAGAATPNTRPLDDYLEMGGGFCADDSEMDKNHDAIDDMNTATTISPGCSEFLGETDRDKSSSDILFSGTEKVTSEIQDGETCHKLDTVPNDHLNAGIRVLTPENAHHNSESSEVAFSAMPFLRKKRKR* 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3906 1449 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 139 1449 - -
Psa3g3906 1449 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 37 113 - -
Psa3g3906 1449 MobiDBLite consensus disorder prediction 710 745 - -
Psa3g3906 1449 Gene3D - 915 1003 - -
Psa3g3906 1449 SMART xpgineu 846 915 IPR006086 GO:0004518
Psa3g3906 1449 Pfam Ubiquitin binding region 215 242 IPR025527 -
Psa3g3906 1449 Pfam Ubiquitin binding region 85 109 IPR025527 -
Psa3g3906 1449 Pfam XPG I-region 849 930 IPR006086 GO:0004518
Psa3g3906 1449 MobiDBLite consensus disorder prediction 1425 1449 - -
Psa3g3906 1449 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 915 1098 IPR036279 -
Psa3g3906 1449 Coils Coil 802 836 - -
Psa3g3906 1449 MobiDBLite consensus disorder prediction 1190 1204 - -
Psa3g3906 1449 MobiDBLite consensus disorder prediction 1174 1188 - -
Psa3g3906 1449 ProSitePatterns XPG protein signature 2. 849 863 IPR019974 GO:0016788
Psa3g3906 1449 MobiDBLite consensus disorder prediction 1115 1159 - -
Psa3g3906 1449 Gene3D - 800 914 - -
Psa3g3906 1449 SMART HhH_4 917 950 IPR008918 GO:0003677|GO:0003824
Psa3g3906 1449 SUPERFAMILY PIN domain-like 818 930 IPR029060 -
Psa3g3906 1449 CDD PIN_XPG_RAD2 832 1074 - -
Psa3g3906 1449 CDD H3TH_XPG 918 1035 - -
Psa3g3906 1449 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 37 113 - -
Psa3g3906 1449 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 139 1449 - -
Psa3g3906 1449 MobiDBLite consensus disorder prediction 1109 1232 - -
Psa3g3906 1449 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 845 862 IPR006084 -
Psa3g3906 1449 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 866 886 IPR006084 -
Psa3g3906 1449 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 920 935 IPR006084 -
Psa3g3906 1449 MobiDBLite consensus disorder prediction 720 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3906 Psa-Chr3 360535207 360550429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3906 825 967 Core DNA Replication Machinery Family AT5G26680 30.675 2.02e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3906 K10846 - gmx:100820295 1631.31