Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3897 ATGATTTATGGTAGGTGTGCAGCTTGCAAGAATCAAAGAAGAAGATGCCCACCTGATTGCATTTTCTCTCCATATTTTCCTCCCAATGATCCTCAAAGATTTGCATTTGTTCATAGAATCTATGGTGCTAGCAATGTTGGAAAAAAACTTCAGCAATTGCCCCATTATGTAAGAGGAGAAGCTGCAAATAATTTATATTTAGAAGCAAAATGTAGAATTCAAGATCCTGTTTATGGATGTGTTGGGATTATTTCTAAATTGTATCAACAAATTCATGATGCAGAAATTGAGTTGGCCAAAATTCAGACTCAGATTGCTTTTCATAAACTCCAAAATCCACATTTTGAAGCTGAAAAATCAAACTTAAATCTTTTGCCACCTCAGAGTAACAACATGGAGCAGTTTCAATGGCCTAGTCAAGCTACTAAATGGTTCAATTAA 441 0.3492 MIYGRCAACKNQRRRCPPDCIFSPYFPPNDPQRFAFVHRIYGASNVGKKLQQLPHYVRGEAANNLYLEAKCRIQDPVYGCVGIISKLYQQIHDAEIELAKIQTQIAFHKLQNPHFEAEKSNLNLLPPQSNNMEQFQWPSQATKWFN* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3897 146 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Psa3g3897 146 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Psa3g3897 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 116 - -
Psa3g3897 146 Coils Coil 84 111 - -
Psa3g3897 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3897 Psa-Chr3 358572761 358573348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3897 5 116 AS2 family AT3G26620 64.035 4.43e-48 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa3g3897 LOB 1.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3897 - - lang:109328513 211.46