Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa3g3850 | ATGACGTTATTCAAACTAATCCGACCGTTAGAAAATAACAATATTTCCTTTTCTGATATTCTCGTATCTTCTTTTCTTCGCCCTTCTCTCCAAATGCTGCAAAATCAAAACCAAAAATCAAGATCTAGTAGCAGTGTGTTTGTCTGTGACTGCATAACCGCAATAAAAATGGTGGAAAGTGGAGAACAAATGCAAAGTCCGGTAATCCGAAAGAAAACGGCTTTGATGGAATCAAATAGGCAAAACATGGCTTCGCTTATCAGTCCTAGGTTCAAATCTGCTGCTGCTATGGCTGGTTGGGATGAAGAAGCACTTTTGCTTGCAGCTCTCATTGTTGAAGATACCCCAGATCGAGATTCCAAACAAAAGAAACGTCTTGTTTTGAATTCCAAATCCCCTCTCTCCAATTCATCAAGGAAACGGAGATCTCTGAGGAACCCACAGCCGATTGTTCTTGATCTTGATGAAGAAGAAACCCCCAAAAAGGATAGTGGGAAGAAGAAGAGAGAAAAGAAGAATGGCGAAGAAAGTAAAGTTGGAGAAAAGGAACTGTCTAAGAAGGGATCTGATGTGAATTCCAACAGTTCTGCTCTTCCTTGTATGGATAAGCTAAGGGAGGAGCTTTCGTGTGCAATTTGTTTGGAGATATGTTTTGAGCCAAGTACCACCCCTTGTGGTCATAGCTTCTGTAAAAAATGTCTGAAATCTGCTGCAGACAAGTGTGGCAAAAAGTGTCCTAAATGCAGGCAATTGATAAGCAATGGGCGATCGTGCACAGTGAACACGGTTCTGTGGAACACAATTCAACTTCTATTTCCTCAAGAAATTGAAGCACGGAAAGTTGCTGCTAGCACCATAAATAATAGACAAGCTGCTCAGAATACAATTCCAGAAACAACATTTTATACTAACCCAAGGAATAGAAGTTTACAACCATATCCATCCAGGGGTTTGAATTCAAGGAGAAATGAGGCGGCGACAACACAGGATGAAGAGGATGCTGCATTGGCTAGAAGGCTGCAAAGAGAAATTGATAGAGAAAATAACAACCGTAGAACTTCAACATTATCATCAATTGTAAGAGCGAGGTCAAGAAGAGGGGTTTCTAACCAAGATGAAGATGCTGCTTTTGCTCTAAGGTTGCAAAGAAATGAGTTTATGCAAGCTTTTAGAAGTAGCAGCCAGGAACCATCATCTTCTTCCTCCACATTATTAGCTGGACCAAATTTGAGGGCTATGGCAACTAGAGCCATGAATCTTCGTAATAGAGATAGAAGGGTATAA | 1284 | 0.4073 | MTLFKLIRPLENNNISFSDILVSSFLRPSLQMLQNQNQKSRSSSSVFVCDCITAIKMVESGEQMQSPVIRKKTALMESNRQNMASLISPRFKSAAAMAGWDEEALLLAALIVEDTPDRDSKQKKRLVLNSKSPLSNSSRKRRSLRNPQPIVLDLDEEETPKKDSGKKKREKKNGEESKVGEKELSKKGSDVNSNSSALPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCLKSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKVAASTINNRQAAQNTIPETTFYTNPRNRSLQPYPSRGLNSRRNEAATTQDEEDAALARRLQREIDRENNNRRTSTLSSIVRARSRRGVSNQDEDAAFALRLQRNEFMQAFRSSSQEPSSSSSTLLAGPNLRAMATRAMNLRNRDRRV* | 428 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa3g3850 | 427 | ProSiteProfiles | Zinc finger RING-type profile. | 210 | 249 | IPR001841 | - | |
| Psa3g3850 | 427 | SUPERFAMILY | RING/U-box | 202 | 273 | - | - | |
| Psa3g3850 | 427 | MobiDBLite | consensus disorder prediction | 390 | 409 | - | - | |
| Psa3g3850 | 427 | ProSitePatterns | Zinc finger RING-type signature. | 225 | 234 | IPR017907 | - | |
| Psa3g3850 | 427 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 279 | IPR013083 | - | |
| Psa3g3850 | 427 | MobiDBLite | consensus disorder prediction | 118 | 190 | - | - | |
| Psa3g3850 | 427 | SMART | ring_2 | 210 | 248 | IPR001841 | - | |
| Psa3g3850 | 427 | PANTHER | UNCHARACTERIZED | 77 | 291 | - | - | |
| Psa3g3850 | 427 | PANTHER | UNCHARACTERIZED | 359 | 425 | - | - | |
| Psa3g3850 | 427 | PANTHER | - | 359 | 425 | - | - | |
| Psa3g3850 | 427 | PANTHER | - | 77 | 291 | - | - | |
| Psa3g3850 | 427 | MobiDBLite | consensus disorder prediction | 390 | 408 | - | - | |
| Psa3g3850 | 427 | MobiDBLite | consensus disorder prediction | 302 | 324 | - | - | |
| Psa3g3850 | 427 | MobiDBLite | consensus disorder prediction | 127 | 144 | - | - | |
| Psa3g3850 | 427 | MobiDBLite | consensus disorder prediction | 151 | 188 | - | - | |
| Psa3g3850 | 427 | Pfam | Zinc finger, C3HC4 type (RING finger) | 210 | 248 | IPR018957 | GO:0046872 | |
| Psa3g3850 | 427 | MobiDBLite | consensus disorder prediction | 302 | 334 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa3g3850 | 184 | 253 | RAD5 or RAD16-like Gene Family | AT5G22750 | 35.616 | 3.39e-06 | 47.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa3g3850 | - | - | gmx:102666585 | 403.675 |
Event-related genes