Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3814 ATGGACGCTCTTGATTCGAATCCTCCCATCGATCTACCTCCACACAACGACACCACATCAGATTATCACAACCAATCCCAAACCCTAATTCCCGAAAACGGCATCAACGGGAACTCATCTGAAAACGACCAAGCCGCCGCTGCCGATAACAATCCACGGCCACGTATTACAAATCCACTTCTCTCCGAGAATGGTTTGACCGGCAACACCCGAAGCGGAACCGATAAGGATCAATCAGGCGGCGAAGAAGAGACAACCAGTAAGCGCCGCCGTAGAAGCCGATGGGATCCACAACCAGATTCAAATGATCAGACTGGCGGCGAAACTGGAACTAAGAAAAGGAAATCACGATGGGCAGATGATGAGCCGAAACCGGTAATTCAACTTCCTGATTTCATGGGTGGTATTGAATTCGATCCTGAAATTCAGGCTTTGAATAGTAGGTTACTTGAGATTAGTAGAATGTTGCAATCTGGTTTGCCTTTAGATGATCGTCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTATATATGATAATATGGGAATTAGGATTAATACTAGAGAGTATCGTGCACGTGAGAGGTTACAAAAGGAGAGACAAGAGATTATATCTCAGATTATTAAGAAAAATCCTGCCTTTAAGCCACCTGCGGATTATAGACCACCCAAGCTTCAGAAGAAGCTTTATATACCAATGAAGGAATACCCTGGTTATAATTTCATAGGGCTTATTATTGGTCCTAGGGGTAATACTCAGAAACGGATGGAGAAAGAAACTGGTGCTAAGATTGTGATTCGAGGTAAAGGGTCTGTGAAAGAAGGTAGGCTGCAACAGAAGAGGGATTTGAAACCGGATCCGTCCGAGAATGAAGATTTGCATGTTTTGGTGGAGGCTGATACTGCGGATGCGCTTGAAGCTGCAGCTGGTATGGTGGAGAAACTCTTGCAGCCTGTGGATGAGGTTTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCTGCTTTAAATGGAACCATTAGGGATGAAGAGTATTGTAGGCTGTGTGGTGAACCTGGTCATCGTCAATATGCATGTCCTACAAGGACTTCAACATTTAAGAGTGAAGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGCATAGATTGTCCGGTGAAGGGTGCTACGGGGAAGAAGATGGATGATGAGTATCAGAATTTCTTGGCTGAGTTGGGTGGTACTGTTCCTGAATCTGCAACAAAGCAAACTAGTACTTTGGCAATCGGGCCGGGCAGTTCTGGAAGCAATCCACCTTGGGCTAATAACTCTGGTTCGGCTGGTAGTACACCACACCCTGGCTTAGGGTCTGGTGCAATTAAAAAGGAAATTGATGATACAAATTTGTACATTGGATATTTGCCACCCACTCTTGAGGATGATGGTCTGATCCAGTTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATTAAAGATCGAATGACAGGGTTGAGTAAAGGATATGGGTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATTGTGGCTATGAATGGTTATCGTCTCGAGGGCCGAACCATTGCAGTGAGGGTTGCTGGTAAGCCTCCTCAGCCTGTTGTGCCTCCTGGCCCACCACCGTCGGCTGTGCCCACTTATCCTGTTCCAAGCCAGCCACTTGGTGCCTATCCATCCCAACAATATACTGGCGGTGGTCCACTTGGGAATGCTCCTCCTCCTCCTGGGAGTTACGGTGGTACTCCAGTCCCATGGGGACCTCCTATTCCTCAATACAATCCTTATGCTCCCCCTCCACCTGGATCAACTATGTATCCTCCTATGCAAGGTCACCCTATGCCTCCTTATGGTGTTCAATATCCACCCATGCCGACAGGTCCCCCTGGTGCCACGACCCAGCCCGCAACTTCGGGTGAAATGCAGAATTACCCTCCTGGAGTGCAGTCAGATAGCAACACATCTACTCAGTCTGTACCTACCAACATGTATGGGAACCCAGTACCTTCAATGCCACCAGCAGCTCCACCAACATATCCTGCATCTTATGGATATCCTCCTCCACCTTACTACAATGCAGTTCCTCCACCACCTCCTCCTCCTGCCCCTACAGACCAATCCCACAACATTGTAAACCCTCCTTGGGCTAGCAACCAGTCTGCCCCACCTCCTCCTTCATCTGCAGATCAATCCCAAAGCATTGGAAATGCAGCTATTCCACCTCCCAACTCATCGGCGGAAAAGACATCATACGGAGCTGATTCAGAGTATGAGAAATTCATGGCAGAGATGAAGTGA 2328 0.4716 MDALDSNPPIDLPPHNDTTSDYHNQSQTLIPENGINGNSSENDQAAAADNNPRPRITNPLLSENGLTGNTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQTGGETGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLAIGPGSSGSNPPWANNSGSAGSTPHPGLGSGAIKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPPSAVPTYPVPSQPLGAYPSQQYTGGGPLGNAPPPPGSYGGTPVPWGPPIPQYNPYAPPPPGSTMYPPMQGHPMPPYGVQYPPMPTGPPGATTQPATSGEMQNYPPGVQSDSNTSTQSVPTNMYGNPVPSMPPAAPPTYPASYGYPPPPYYNAVPPPPPPPAPTDQSHNIVNPPWASNQSAPPPPSSADQSQSIGNAAIPPPNSSAEKTSYGADSEYEKFMAEMK* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3814 775 Pfam Splicing factor 1 helix-hairpin domain 114 221 IPR032570 -
Psa3g3814 775 CDD SF1_like-KH 226 342 - -
Psa3g3814 775 Gene3D - 346 398 - -
Psa3g3814 775 SUPERFAMILY RNA-binding domain, RBD 459 551 IPR035979 GO:0003676
Psa3g3814 775 MobiDBLite consensus disorder prediction 55 75 - -
Psa3g3814 775 Gene3D - 139 216 - -
Psa3g3814 775 ProSiteProfiles Type-1 KH domain profile. 240 312 - -
Psa3g3814 775 ProSiteProfiles Zinc finger CCHC-type profile. 347 361 IPR001878 GO:0003676|GO:0008270
Psa3g3814 775 SMART kh_6 225 317 IPR004087 GO:0003676
Psa3g3814 775 MobiDBLite consensus disorder prediction 107 124 - -
Psa3g3814 775 MobiDBLite consensus disorder prediction 718 761 - -
Psa3g3814 775 MobiDBLite consensus disorder prediction 12 47 - -
Psa3g3814 775 MobiDBLite consensus disorder prediction 1 125 - -
Psa3g3814 775 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 462 540 IPR000504 GO:0003723
Psa3g3814 775 SMART rrm1_1 463 536 IPR000504 GO:0003723
Psa3g3814 775 MobiDBLite consensus disorder prediction 706 775 - -
Psa3g3814 775 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 41 775 - -
Psa3g3814 775 Gene3D - 432 544 IPR012677 -
Psa3g3814 775 PANTHER RNA-BINDING PROTEIN RELATED 41 775 IPR045071 -
Psa3g3814 775 Pfam KH domain 240 288 IPR004088 GO:0003723
Psa3g3814 775 SUPERFAMILY Retrovirus zinc finger-like domains 343 389 IPR036875 GO:0003676|GO:0008270
Psa3g3814 775 MobiDBLite consensus disorder prediction 270 290 - -
Psa3g3814 775 Gene3D K Homology domain, type 1 217 345 IPR036612 GO:0003723
Psa3g3814 775 SMART c2hcfinal6 346 362 IPR001878 GO:0003676|GO:0008270
Psa3g3814 775 SMART c2hcfinal6 372 388 IPR001878 GO:0003676|GO:0008270
Psa3g3814 775 MobiDBLite consensus disorder prediction 76 98 - -
Psa3g3814 775 ProSiteProfiles Zinc finger CCHC-type profile. 373 387 IPR001878 GO:0003676|GO:0008270
Psa3g3814 775 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 225 351 IPR036612 GO:0003723
Psa3g3814 775 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 464 533 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3814 Psa-Chr3 343897697 343903321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3814 462 667 Eukaryotic Initiation Factors Gene Family AT3G16380 26.636 1.65e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3814 K13095 - gmx:100800982 1119.38