Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3808 ATGGCATCATCTTCAAGCTTGTACTCAAATTCACCATGTGCTGCGTGCAAGTTTTTGAGAAGGAAGTGCATGCCAGATTGCATATTTGCTCCATATTTCCCACCAGAAGAGCCACAGAAATTTGCAAACGTCCACAAAATATTTGGTGCAAGCAATGTGAGTAAGCTTTTGAATGAAGTTCAACCTCATCAAAGAGAAGATGCTGTCAACTCTCTTGCTTATGAAGCTGAGGCAAGGATTAAGGATCCTGTTTATGGTTGTGTTGGTGCTATTTCAGTCCTCCAAAGACAAGTTATTACTCTCCAAAAAGAACTCGATTCTACTAATGCTGATTTGATTCGTTATAATGAAATATTGCCAAATCATGGAGGTTCTTCTTCTCCTCCTCCTCCTCCAACTTTTTACTATCCTTCACCTTGGAACAATGATGATCCACTTGGGGATGCTTATCACACAGGTGGAGGTGGCAATATATAA 477 0.4025 MASSSSLYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVITLQKELDSTNADLIRYNEILPNHGGSSSPPPPPTFYYPSPWNNDDPLGDAYHTGGGGNI* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3808 158 Coils Coil 91 111 - -
Psa3g3808 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 118 - -
Psa3g3808 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 5 118 - -
Psa3g3808 158 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Psa3g3808 158 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3808 Psa-Chr3 343114001 343114833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3808 8 127 AS2 family AT3G27650 79.167 1.00e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa3g3808 LOB 8.6e-43 No_clan