Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3801 ATGGATACAGATCTTAGATTTGCAGGAAATTTTCCTTCTCTTTCTAGGGATTTTCCTAAAAATCCTTGGGTAAAATCAGAGATATCCACAATGGTTCTATTGCAACCAAGTTCATGTCTTTCACCCCCACCATCATATTACAACACATTTTTGGATCCAAATCACTGCACTCAATTTAAGGAACATGCTCAAGAAGAGGCTAATCATCACTCTAGTTTTGCTAGTATGGTTCCTTCCTCTATCACCTCGTTCTCTATGATCCCAACTCCTTCATACAAGAGTGCATCGACCAATGGATCCAAAGAAAAATACTTCGATGGTCAAAATCCAATGAGCTTCACACCAAATAACAACAAAAGGGAAGTCATGCATGGTCACCTTAACACTAGTAATGGAATACGGGATTCATTCACACAAAATATCTTTCAACATGGTGAAACTTCTCAATCTCGTGTGAGTCTGTATCCTTCATTGTCACTAGTTTATGATGCAAATCCATCTATGGCAGTTAAGCCAAATCTTCAAGGAGATCTTTCTTTCATTGGTCGAAATGGAAACAAACCTCTTTATAATGACCAAGAACTCGCACTCAATGACCATAAGAGACATAAGAGAACTAAAAAGAATGTTGAAACTCAACATATGAATCCAAATTTAATCAAACGGAAATGGACTGCAAACGAGGACAGGATTCTTGTTCAATTGGTGGATCAATTTGGATTAGGAAAATGGTCTCAGATTGCTAAGTTTCTAAATGGCAGGATCGGGAAACAATGCAGGGAAAGATGGAATAATCACCTTCGACCCGACATTAAGAAGGAGTCATGGAACCAAGAGGATGACAAAATGCTGATTGAAGCTCACAAGATAGTTGGAAACAAGTGGGCTGAAATCACAAAGAGTTTGCCGGGTCGCACCGAGAACTCCATCAAGAACCGCTGGAATGCCACCAAGCGTAGCCAGAATGCCAAGAAGAGGTTGAACCGTCGTAACAGTTTGAAGGGAACTCTACTTCATAAATACATCATTGAAGTCAATGCTGCAAAGGAAGCTGAAAAGGAGAAGTTGGAGAATGAAAGTTCTAAAAGTGGTTTCAGTTCTGATGGTTTGGCTACTTCTGAAGATGAAACTGGCTATGTTCCAATGATGCAAAATGGTGGTGATGATGGAGGAATGAATTATGATTATGGATCATATGCTATGGAGCTTTTTCCTAATGTTCCTTTGAAGTAG 1233 0.3933 MDTDLRFAGNFPSLSRDFPKNPWVKSEISTMVLLQPSSCLSPPPSYYNTFLDPNHCTQFKEHAQEEANHHSSFASMVPSSITSFSMIPTPSYKSASTNGSKEKYFDGQNPMSFTPNNNKREVMHGHLNTSNGIRDSFTQNIFQHGETSQSRVSLYPSLSLVYDANPSMAVKPNLQGDLSFIGRNGNKPLYNDQELALNDHKRHKRTKKNVETQHMNPNLIKRKWTANEDRILVQLVDQFGLGKWSQIAKFLNGRIGKQCRERWNNHLRPDIKKESWNQEDDKMLIEAHKIVGNKWAEITKSLPGRTENSIKNRWNATKRSQNAKKRLNRRNSLKGTLLHKYIIEVNAAKEAEKEKLENESSKSGFSSDGLATSEDETGYVPMMQNGGDDGGMNYDYGSYAMELFPNVPLK* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3801 410 Gene3D - 218 273 - -
Psa3g3801 410 CDD SANT 223 267 IPR001005 -
Psa3g3801 410 PANTHER MYB PROTEIN-RELATED 146 361 - -
Psa3g3801 410 CDD SANT 275 318 IPR001005 -
Psa3g3801 410 SUPERFAMILY Homeodomain-like 218 314 IPR009057 -
Psa3g3801 410 MobiDBLite consensus disorder prediction 352 379 - -
Psa3g3801 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 272 322 IPR017930 -
Psa3g3801 410 SMART sant 220 269 IPR001005 -
Psa3g3801 410 SMART sant 272 320 IPR001005 -
Psa3g3801 410 PANTHER MYB DOMAIN PROTEIN 100-RELATED 146 361 - -
Psa3g3801 410 Gene3D - 275 317 - -
Psa3g3801 410 Pfam Myb-like DNA-binding domain 224 284 - -
Psa3g3801 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 271 IPR017930 -
Psa3g3801 410 ProSiteProfiles Myb-like domain profile. 216 267 IPR001005 -
Psa3g3801 410 ProSiteProfiles Myb-like domain profile. 268 318 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3801 Psa-Chr3 340714765 340722327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3801 219 348 MYB Transcription Factor Family AT4G18770 63.077 1.58e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g3801 Myb_DNA-bind_6 2.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3801 K09422 - mtr:MTR_4g088015 447.973