Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3795 ATGTCGACCCAATTGAGCTTGTCGTATGGCTTCCAGCTTTGTGCAGGAAGATGGAAATTCCTCTGCATTGTCAAGGGCAAAACACGCTTGGGAACCATTGTTCACAAGAAAACTGCTTCCGTTTTATGCTTGACAACTGTTAAGAATGAAGACAAAATGGAATTTAGCAGAATCCTAGAAGCCATTAAGGCCAACTTCAACGATAAGATCACTGCCCTTCATTGTGCTGCTTCTGGTGGGTCTGTTAATGTTGTTGATGCTTTTAGGCTTCTTATAACGGCGGATGCCCATGTTAGTTGTGTTGATGCCGACGGTAATCTTCCTTTTGATGTCATTGTTTGTTCCTTTCAAGCTGCAGAAATTAAGGCAGTTCTCGAAGAACTTCATTTGGATAATGGTTCTGATAACGGATCTATTGTCGAGTTCCTTGGTCCGGTGTCTGTTGATGCTTCTAGTCTTGAGTTGAAAATAAGCTTTCTTTTGACTGGGACACCGCTCCAGAATAACTTAGCAGAGCTGTGGTCATTGCTGAACTTCATCTTACCTGATATATTCTCATCTCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGTGCTTCTGGAGCAACAATGGAAGAAATGGAAGAGAAAAGAAGAAACCAGGATCATCTAGTTAATGCGACATTCGAGAAACATTTGGACAGGAAACTAACAATAGAACATGCTGCACAACATGGACCCTGA 732 0.4153 MSTQLSLSYGFQLCAGRWKFLCIVKGKTRLGTIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKITALHCAASGGSVNVVDAFRLLITADAHVSCVDADGNLPFDVIVCSFQAAEIKAVLEELHLDNGSDNGSIVEFLGPVSVDASSLELKISFLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCASGATMEEMEEKRRNQDHLVNATFEKHLDRKLTIEHAAQHGP* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3795 243 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 21 73 - -
Psa3g3795 243 SUPERFAMILY L30e-like 12 67 IPR029064 -
Psa3g3795 243 Gene3D - 11 71 IPR029064 -
Psa3g3795 243 Gene3D - 72 143 IPR036770 -
Psa3g3795 243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 197 IPR027417 -
Psa3g3795 243 PRINTS Ribosomal protein L7A family signature 33 57 IPR001921 -
Psa3g3795 243 PRINTS Ribosomal protein L7A family signature 65 85 IPR001921 -
Psa3g3795 243 SUPERFAMILY Ankyrin repeat 56 115 IPR036770 -
Psa3g3795 243 Pfam SNF2-related domain 151 225 IPR000330 GO:0005524|GO:0140658
Psa3g3795 243 PANTHER - 21 73 - -
Psa3g3795 243 Gene3D - 145 229 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3795 Psa-Chr3 339021217 339023015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3795 22 80 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 72.881 6.53e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa3g3795 SNF2_N 2.7e-11 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3795 K19001 - gmx:100817842 108.227