Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3772 ATGGCTTTTACGTTAGGACATGCATTTTCTCATATATTCATCTTTGTATGTTTGCTCTCAATATTCCTAGGAACCCCTTCCTTTTGTTTTAAACCCAAAAACCTTGTTAGTGTTACTTCCAACTTCTCATCTGATTCAGGTTGGGCATCTACTATGGCTACTTGGTATGGGCCTCCGGAAGGTTATGGAAGTGATGGTGGTGCTTGTGGATATGGAAAAGCTGTTGGCCAACCTCCATACAACTCAATGATATCAGCCGGAAACCCTGTCATTTACCAATCAGGAAAAGGCTGTGGTTCATGTTATCATGTGAAGTGCACAGGGAATTCTGCTTGCTCAGGCAACCCTGTTAGGGTACTTATCACTGATGAGTGTCCTGGTTGTGAACATTATTTTGACTTGAGTGGCAAAGCTTTCGGTTCCATGGCAATTGCAGGTCAAGCTAACAACTTACGCAATGCTGGAAAAGTGTCCATTCAATATGAAAAGTGTTAA 495 0.4202 MAFTLGHAFSHIFIFVCLLSIFLGTPSFCFKPKNLVSVTSNFSSDSGWASTMATWYGPPEGYGSDGGACGYGKAVGQPPYNSMISAGNPVIYQSGKGCGSCYHVKCTGNSACSGNPVRVLITDECPGCEHYFDLSGKAFGSMAIAGQANNLRNAGKVSIQYEKC* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3772 164 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 164 IPR007112 -
Psa3g3772 164 Gene3D - 32 164 IPR036908 -
Psa3g3772 164 PANTHER EXPANSIN-B2-RELATED 11 163 - -
Psa3g3772 164 Pfam Lytic transglycolase 85 161 IPR009009 -
Psa3g3772 164 PANTHER EXPANSIN-B3 11 163 - -
Psa3g3772 164 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Psa3g3772 164 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Psa3g3772 164 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Psa3g3772 164 PRINTS Expansin/Lol pI family signature 154 164 IPR007118 GO:0005576
Psa3g3772 164 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Psa3g3772 164 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Psa3g3772 164 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Psa3g3772 164 SUPERFAMILY Barwin-like endoglucanases 36 163 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3772 Psa-Chr3 334011316 334012236 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3772 27 163 Expansin Gene Family AT1G65680 59.286 3.50e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3772 - - vra:106780276 226.098