Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3769 ATGGACAAATACAAGTGCAAACTTTGTTACCGAAGCTTCAACAATGGAAGAGCATTGGGGGGTCACATGAGATCTCACATGATGAATCTTCTTGTTACAAAACAAGAAGATTCGTCACGGATGATTCAACTTAGTTTTGAAGCTGAATCAGCTTCATCTTCATCCGATGATGACGATGATGAAAAAGGTCTTAATTATGGTCTTAGAGAGAATCCAAAGAGAAGCATTCGTCTTGTAGATCAAGAATTCTCTTTTCCACCGGTGGATACAAGCTCTGTGATTCTTCAAGATATAGAAAGCGAAACTGAATCGTCGAAGAACAATCCCACTCGCAAAAGATCTAAAAGGGTGTGGAAAATCCGTCACTTTGATCAAAAGTATTATGATGAATCTAGTTTGAAGAAAGTGAAGTTTTTTAATAAAAATGATTCTTCTTCTGTAGTTGATCATGATCCGGAATCATTGCCCGAATTCGATGTTGTCGAAAAGAAAGTTCATGAATGTCCGGTTTGTTTCCGAGTTTTCAATTCCGGACAAGCACTTGGTGGACACAAAAGAACACATGTGATGCATGGATCAACAACATCAACAACAATTCCAATTTTTAGTACAAAAAAAGTTGGAAAAAGTGTTATAGATCTTAACCTTCCTGCACCAATTGATGATGATGAGGTTAGTCAAATTGAGAATTCTGCTGTTTCAGATGCTGAATTTGTCAAAACTCGTTAG 729 0.3704 MDKYKCKLCYRSFNNGRALGGHMRSHMMNLLVTKQEDSSRMIQLSFEAESASSSSDDDDDEKGLNYGLRENPKRSIRLVDQEFSFPPVDTSSVILQDIESETESSKNNPTRKRSKRVWKIRHFDQKYYDESSLKKVKFFNKNDSSSVVDHDPESLPEFDVVEKKVHECPVCFRVFNSGQALGGHKRTHVMHGSTTSTTIPIFSTKKVGKSVIDLNLPAPIDDDEVSQIENSAVSDAEFVKTR* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3769 242 MobiDBLite consensus disorder prediction 46 67 - -
Psa3g3769 242 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 131 240 IPR044303 GO:0006355
Psa3g3769 242 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 121 IPR044303 GO:0006355
Psa3g3769 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Psa3g3769 242 SMART c2h2final6 166 188 IPR013087 -
Psa3g3769 242 SMART c2h2final6 4 26 IPR013087 -
Psa3g3769 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Psa3g3769 242 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 131 240 - -
Psa3g3769 242 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 121 - -
Psa3g3769 242 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Psa3g3769 242 Gene3D Classic Zinc Finger 2 64 - -
Psa3g3769 242 Pfam C2H2-type zinc finger 4 27 - -
Psa3g3769 242 Pfam C2H2-type zinc finger 165 188 - -
Psa3g3769 242 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Psa3g3769 242 SUPERFAMILY beta-beta-alpha zinc fingers 3 188 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3769 Psa-Chr3 333661521 333662600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3769 1 228 C2H2 Transcription Factor Family AT3G60580 30.189 1.18e-20 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa3g3769 zf-C2H2_6 1.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3769 - - ghi:107924123 172.555