Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3747 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGGTTGGAGGAGATGAAAAATGGAGGAGATTCAATGGATTTGAGGCTTGGTGAGGCTTCTGATTCATTGGAAAAATCGGTTCGGGATAGTGGGAGAAAGGGTGATGATTTGAAAGGCGTGTCGTCGTTTTCTGGATCGTCGAAGAGATCGCGGTTGCAGAATGGATTGCTGAATATGATTTGCTCGGTTGATGGATGTAAGGCGGATCTTAGTGATTGTAGAGAGTATCATAAGCGGCATAGAGTTTGCGAGAAACACTCGAAAACTCCTGTTGTGTTGGTTGGAGGTAAGCAGCAGAGATTCTGCCAACAATGTAGCAGGTTTCATTCGCTTGCGGAGTTTGATGAGGTTAAGAGAAGTTGCAGGAAGCGGCTTGATGGGCATAATAGGCGGAGGAGGAAACCTCAACCACCTTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGTCCTAGAATCCTGCACTTTGGAAGCCCTCAGGCATATGTGAATCCTATTATGAGAAACATTTGGCCTGCCACTGCAATAACCGAAGCTGAATCAGGTTACGACCATCACCGACTTTTGTATCGAATCGACAAACATAAACAGGATAAAGGACATCCTCTTTGGCAAGAAACTGTCCCTAAAGCCGGCGATGTTAACGAAGCAGCGCCAGGAGTTTCTATCAGCCAGCCTATCCGCGGTGCCGTTGGTTCGACCGCAGGTGGAAAAGGCGGTAGGAAGCTCTCTTCTGATAGCAAACCTGGATCTTTTGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTTCCGAGTTGAGTTTGATGCAGTCCAGCATCAAGGACAGTCCAACACAGTCTTCATCCGGAACGATGCGTTTTGATGCCACGAACGAGTATTTGTGCTCGGGTAAGGTTAAAGATAAGCCTAATAATGGTCAAGTGTTTGTTCTAGATGCAAACACAACAAACCTTCAATGTAATGGGATGCTGCAAATGGGGCCTAATAATGGTTTGATGGAAAACGAAAACTCGCTGACGCTGCCATTTTTCTGGGAGTAA 1104 0.4574 MDWDWKEFAWDPSGLEEMKNGGDSMDLRLGEASDSLEKSVRDSGRKGDDLKGVSSFSGSSKRSRLQNGLLNMICSVDGCKADLSDCREYHKRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLAEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPQAYVNPIMRNIWPATAITEAESGYDHHRLLYRIDKHKQDKGHPLWQETVPKAGDVNEAAPGVSISQPIRGAVGSTAGGKGGRKLSSDSKPGSFDSGCALYLLSTLQSQSSELSLMQSSIKDSPTQSSSGTMRFDATNEYLCSGKVKDKPNNGQVFVLDANTTNLQCNGMLQMGPNNGLMENENSLTLPFFWE* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3747 367 MobiDBLite consensus disorder prediction 243 264 - -
Psa3g3747 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 367 IPR044817 GO:0003677
Psa3g3747 367 SUPERFAMILY SBT domain 72 153 IPR036893 GO:0003677|GO:0005634
Psa3g3747 367 Gene3D - 66 135 IPR036893 GO:0003677|GO:0005634
Psa3g3747 367 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 9 367 - -
Psa3g3747 367 MobiDBLite consensus disorder prediction 30 49 - -
Psa3g3747 367 MobiDBLite consensus disorder prediction 16 57 - -
Psa3g3747 367 Pfam SBP domain 74 147 IPR004333 GO:0003677
Psa3g3747 367 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3747 Psa-Chr3 327115340 327118585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3747 73 199 SBP-box Gene Family AT5G50670 54.887 1.08e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa3g3747 SBP 7.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3747 - - lja:Lj1g3v3847150.1 530.02