Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3740 ATGGGTCGTCGTAAAATTGAGATTGAGTTGGTGAAAGATCCAAACACGAGGCAAGTCACCTTTTCAAAGCGGAGAACTGGTTTATTCAAGAAAGCAAATGAATTGTCAATTTTGTGTGGAGCAGAAGTGGCCATTGTTGTGTTCTCTCCAGGTAATAAGCCTTACTCTTTTGGTCATCCAGGAGTTGATATTGTTGCAGAAACCTATCTCCAACAAGAGTCACAATCAAGTGATTCTCAAGAATACTCCTCTTTCGAAACTCCCAATGTGGAGAAATTGGAGAAATTGAATCAGGAATTTGTTGAAATTATGGCACAAATTAATGAAGCTGAAAAGGAAGCCAAGAGTCATGATCAGATCTTGAAAGAAAATGATGAGAGAAATCTTGTCGAGCTTAAAGAATTGAGAGATTCATACATAGAGCTTCAAGATTCGGTAAAATTACGTTTAAGTGATCTGGAGATATCACAATATATGATGCTTCTTGCACAGGATCCAGTGGTAGGAGTAAAGGCAAAATCTGCAAGAAAGAAAAGAAGAAATAAAAACTGA 552 0.3732 MGRRKIEIELVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDIVAETYLQQESQSSDSQEYSSFETPNVEKLEKLNQEFVEIMAQINEAEKEAKSHDQILKENDERNLVELKELRDSYIELQDSVKLRLSDLEISQYMMLLAQDPVVGVKAKSARKKRRNKN* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3740 183 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Psa3g3740 183 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa3g3740 183 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa3g3740 183 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa3g3740 183 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Psa3g3740 183 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa3g3740 183 CDD MADS 2 60 - -
Psa3g3740 183 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa3g3740 183 Coils Coil 90 142 - -
Psa3g3740 183 PANTHER MADS BOX PROTEIN 2 174 - -
Psa3g3740 183 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 174 - -
Psa3g3740 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3740 Psa-Chr3 326077642 326078498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3740 1 164 Type I MADS-box Gene Family AT2G34440 43.182 7.48e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa3g3740 SRF-TF 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3740 - - mtr:MTR_4g131030 228.024