Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3716 ATGGATCCCAAAAACTCAAAACAACAACTTACAAACACCAACAACAACATGGGAGATGATAACAACAAACAACAATCTTCCGAATCAAAGAATACCCAGATTGTGTCATCTGAAACAAAACAAGACGAAACAAAGAAACAGCTAGCACCAAAAAGAACATCAAACAAAGACAGACACACAAAGGTTGAAGGAAGAGGAAGAAGAATAAGGATGCCAGCTCTATGCGCTGCAAGAATCTTTCAATTAACGAAAGAGTTAGGTCATAAGTCAGATGGTGAAACAATTCAATGGCTTCTTCAGCAATCTGAACCGTCCATCATAGCTGCAACAGGAACAGGGACAATACCTGCTTCAGCTTTGGCTTCATCTGGCAACACTTTGACATCACAAGGTTCATCTTTGTCTTCTGGTTTACAGTTGCATCAGAAAATTGATGAAAGAACCAGCTGGGCCACCCATCAGGCCCATCAGGTTAGTTCATCAAGTTTATGGCCCCATGGATTTGGATTTCATCAATCTTCATCTGGTTTAGCAACTGCTACCGCTAGTGAAAATAGTTCAAGTTATTTTCAGAAAATTGGGTTTTCTGGATTTGATATGCCAGGGGCTAATTTGGGTGGGATGAGTTTTACATCAATTTTGGGTGGGAATCAACAGATGCCACCTGGTTTGGAATTAGGTTTGTCACAAGATGGACATATTGGTGTGTTGAATAACCAGGCTTTGAGTCAGATTTATCAGCAGTTTGGTCAAAATCATCAAACTAGGGTGCATCAGCAAAATCAGAACCAGAATCAGAATATTACTAAGGATGATTCTCAAAGTTCAGAACAGTAG 837 0.399 MDPKNSKQQLTNTNNNMGDDNNKQQSSESKNTQIVSSETKQDETKKQLAPKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTKELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASALASSGNTLTSQGSSLSSGLQLHQKIDERTSWATHQAHQVSSSSLWPHGFGFHQSSSGLATATASENSSSYFQKIGFSGFDMPGANLGGMSFTSILGGNQQMPPGLELGLSQDGHIGVLNNQALSQIYQQFGQNHQTRVHQQNQNQNQNITKDDSQSSEQ* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3716 278 Pfam TCP family transcription factor 53 160 IPR017887 -
Psa3g3716 278 MobiDBLite consensus disorder prediction 39 68 - -
Psa3g3716 278 MobiDBLite consensus disorder prediction 1 68 - -
Psa3g3716 278 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 276 IPR005333 GO:0003700
Psa3g3716 278 MobiDBLite consensus disorder prediction 1 38 - -
Psa3g3716 278 MobiDBLite consensus disorder prediction 252 278 - -
Psa3g3716 278 ProSiteProfiles TCP domain profile. 55 109 IPR017887 -
Psa3g3716 278 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3716 Psa-Chr3 321630308 321632028 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3716 1 246 TCP Transcription Factor Family AT3G27010 53.381 9.93e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa3g3716 TCP 2.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3716 - - vvi:100253170 299.671