Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3686 GCGTCAAAAATTTTGAAGCGCAGAGGCAAGTTTGTTCATGACGGGAAAAAGATTATAGGAGATGTCCCTGGAATAGAAGTTGGCGATGAGTTTCAGTATTTTGAAGTACTCAACATTGTTGGTCTCCATCGTAAGATCTTCAATGGAATTGATCATGTGAGATACAATGGGATGTTTATTGCAAGTAGCGTTGTTTCATGTCGATTAAATGATGATATATTGGATGATGCAGAACTGGTGATTTCTACAGGAGAACAAGGTAATATTATTAATAATCAAAATCAACCTCGAGAAAATCTTGCATTGATGTATAGTTTATATGCTGAAAATCCTGTTAGAGTTATAATTAAGTTAAATTCCAAGAATGGCAGTGGTAGTGTTAATGGTGGTGAAAAATATTGTTATTTTGGTCTTTACAAGGTTGTTAGGTTTTGGAAAATAATTGGAAAATTAGGTTACAATTTTCTTTTGGTTAAATCACCTGATCAGAAAAAGGTTGCTTGCAATGATATGAGGAAGCGTAAAAAAATTATTAAAAGGGAAAAGTGTTTGAATTATTTTGAAGATATTTCTCACGGAAAAGAGGATTTTCATATACCTATGCTTAATTGTGTAGATTCTGAAGGTGTTCCAAATTTTCGATATGTTACTCAGATGGTTAATCTTGAACGGTATAAGCCTAAAAAGTATAGTCCTCTTAAAGGCAATGTTAGAGTTTCTCAAAATGGAATTAAATTTCCTCTTGAGATTTTCAAGACTAAGAAAAAAGGGTGGGGTGTGCGATCAAAAAAGAAAATGCCTTCAGGAAGTTTTATATGTGAGTATTTAGGTGAGATAATTGAAGATGAGCAAGCTGTGAAAATGATCGACAATGACGAGTATCTATTTAACATTGGTAGCACAAATCACAAGGATGGCATGTTTACAATTGATGCTTCTAAGTATGGTAATATGGCGAGATTTATCAACCATAGTTGTTCTCCAAATTTGTTTTGTTTGAATGTTCTTTTTGATCATGATGATGTTAGGATTCCATACATCATGCTATTTGCAGCTGAGGACATTCCGCAAAAGACAGAGCTGACCTACAATTATAATTACAAAATAGATCAAGTGGTTGATAATGGAGTTGTAAAGAAGAAGTATTGCTATTGTGGAGCCTCCAACTGCATTGGTAGACTGTATTAA 1188 0.3359 ASKILKRRGKFVHDGKKIIGDVPGIEVGDEFQYFEVLNIVGLHRKIFNGIDHVRYNGMFIASSVVSCRLNDDILDDAELVISTGEQGNIINNQNQPRENLALMYSLYAENPVRVIIKLNSKNGSGSVNGGEKYCYFGLYKVVRFWKIIGKLGYNFLLVKSPDQKKVACNDMRKRKKIIKREKCLNYFEDISHGKEDFHIPMLNCVDSEGVPNFRYVTQMVNLERYKPKKYSPLKGNVRVSQNGIKFPLEIFKTKKKGWGVRSKKKMPSGSFICEYLGEIIEDEQAVKMIDNDEYLFNIGSTNHKDGMFTIDASKYGNMARFINHSCSPNLFCLNVLFDHDDVRIPYIMLFAAEDIPQKTELTYNYNYKIDQVVDNGVVKKKYCYCGASNCIGRLY* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3686 395 Gene3D SET domain 182 395 IPR046341 -
Psa3g3686 395 SUPERFAMILY PUA domain-like 16 176 IPR015947 -
Psa3g3686 395 ProSiteProfiles YDG domain profile. 20 164 IPR003105 -
Psa3g3686 395 Pfam SET domain 257 366 IPR001214 GO:0005515
Psa3g3686 395 Pfam SAD/SRA domain 19 163 IPR003105 -
Psa3g3686 395 ProSiteProfiles Post-SET domain profile. 379 395 IPR003616 -
Psa3g3686 395 SMART G9a_1 15 163 IPR003105 -
Psa3g3686 395 SMART set_7 246 372 IPR001214 GO:0005515
Psa3g3686 395 Gene3D - 4 181 IPR036987 -
Psa3g3686 395 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 1 228 - -
Psa3g3686 395 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 236 393 - -
Psa3g3686 395 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 236 393 - -
Psa3g3686 395 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 228 - -
Psa3g3686 395 SMART PostSET_3 379 395 IPR003616 -
Psa3g3686 395 ProSiteProfiles SET domain profile. 246 366 IPR001214 GO:0005515
Psa3g3686 395 SUPERFAMILY SET domain 179 372 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3686 Psa-Chr3 316200711 316202373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3686 16 395 EF-hand Containing Proteins AT5G13960 31.959 2.14e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa3g3686 SAD_SRA 1.4e-24 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3686 K11420 - mtr:MTR_7g445710 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3686 3 316200711 316202373 Psa3g3686 3 316200711 316202373 ECH