Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3652 ATGTCGAATTTGTACGGTGATTACAACCTGAAGATCGATTACGTTTTCAAGGTTGTATTGATTGGTGATTCCGCAGTTGGAAAAACTCAACTACTCGCTCGTTTTGCGAGGAACGAATTTAGCGCTGATTCTAAGGCTACCATTGGGGTGGAATTTCAAACCAAAACTTTGATTATTGATAATAAAACTATTAAGGCTCAGATATGGGATACTGCAGGTCAAGAAAGGTACAGGGCAGTTACTAGTGCATACTATCGAGGCGCAGTTGGGGCAATGATAGTTTACGACATGACAAAGCGTCAATCGTTCGATCACTTGGCGAGATGGCTGGAAGAGTTAAGAGGTCACGCCGATAAAAACATTGTCATCATGTTAATCGGCAACAAATGTGATCTCTCTAGTCTTAGAGCAGTTCCAACAGAAGACGCGGAGGAGTTTGCACAAAGAGAGAATCTCTTCTTCATGGAGACCTCAGCACTTGAATCGACCAACGTTGAAACTTGTTTTTTAACTATATTAACCGAGATATACAGAATCAATGCAAAGAAAACACTCAGTTCCAATGGTGATCCAGATCAAAATACCGCAGGACTTATGAAGGGAAGTAGGATAATTGTTCCTAGTAGTGAAATGAATGGATCAAAAAAGGGTTGCTGTTTTGCCACTTAG 669 0.4081 MSNLYGDYNLKIDYVFKVVLIGDSAVGKTQLLARFARNEFSADSKATIGVEFQTKTLIIDNKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMIVYDMTKRQSFDHLARWLEELRGHADKNIVIMLIGNKCDLSSLRAVPTEDAEEFAQRENLFFMETSALESTNVETCFLTILTEIYRINAKKTLSSNGDPDQNTAGLMKGSRIIVPSSEMNGSKKGCCFAT* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3652 222 SMART rab_sub_5 16 179 - -
Psa3g3652 222 SMART ras_sub_4 13 179 - -
Psa3g3652 222 SMART rho_sub_3 18 175 IPR001806 GO:0003924|GO:0005525
Psa3g3652 222 SMART arf_sub_2 1 181 - -
Psa3g3652 222 SMART ran_sub_2 21 214 - -
Psa3g3652 222 PANTHER BNAA05G26830D PROTEIN 1 220 - -
Psa3g3652 222 CDD Rab11_like 13 177 - -
Psa3g3652 222 Gene3D - 9 219 IPR027417 -
Psa3g3652 222 ProSiteProfiles small GTPase Rho family profile. 9 181 - -
Psa3g3652 222 PANTHER - 1 220 - -
Psa3g3652 222 Pfam Ras family 17 177 IPR001806 GO:0003924|GO:0005525
Psa3g3652 222 ProSiteProfiles small GTPase Ras family profile. 8 206 IPR001806 GO:0003924|GO:0005525
Psa3g3652 222 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Psa3g3652 222 PRINTS Transforming protein P21 ras signature 16 37 - -
Psa3g3652 222 PRINTS Transforming protein P21 ras signature 39 55 - -
Psa3g3652 222 PRINTS Transforming protein P21 ras signature 57 79 - -
Psa3g3652 222 PRINTS Transforming protein P21 ras signature 119 132 - -
Psa3g3652 222 PRINTS Transforming protein P21 ras signature 154 176 - -
Psa3g3652 222 ProSiteProfiles small GTPase Rab1 family profile. 11 219 - -
Psa3g3652 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 184 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3652 Psa-Chr3 311086886 311089427 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3652 K07904 - gmx:100806396 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4789 4 418820198 418821827 Psa3g3652 3 311086886 311089427 PCT