Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3636 ATGATGGTAGGAGTTTCAAGTAGAACTCGCAGCAAGAACGTTCCTCTCTATGGTAGTCTTTCCCTTCATGGATCATCAAAGCGGAGAAAGAGCAAGGAAGACGATACGTGTTTTGCTGCTTCTTGTTCTAAACAAAGAAAGGCAAAGAAAGAACCATTTGTGTTGCCTCCAGATGCTAAAGTTATTTACATTGATGATGAAAATGGAGATGATGCCGTAGAGAAAAAGTCCGAGTCTTGTGCTGCGGATATTAAAGAAGAAGTGGAAAATGGGGAGTTTGTTGATGAAAAGCCGTCTGTTGTATGTTTAGATGAATCAGGTGAAAGCTATGAAGAAGATTCAGATTGTGATGAAAGTGAAGAAAATGAGTCAAGTGATGAAGATTTTAGCATAAATGAAGTGAATGAGGTTTCTGAGAGTGATGAAGATGGTGGTTCATCTTGCTCTTCTTATGTGGATGAGGCTAAGAGAAACAGTTCACGGAAATACCTAGAAGTGGTGGCGGAGATGGTGAGAAAGGTAAAGGATGATGAAAATAGTGACATTCCAAAGAAAAAGATTAAGAGTAGTGATGATGAAAAAAGTGAAATTCCAAAGAGGATGAAGATTAAGAGTAGTGATGATGAAAACAGCGAAATTTCAAACAAGAAAAAGATTAAGAGTAGTGTAAAAACAACTACTGGTGTTTTAGAGAAGAAGGGTGTTTTTCATCCAATGGAGGGTTGTTGTTCTTCCTCTAAACTGGATATAGCATCAGAGACAAAAAAGGAAAAAAATGTCTCTGATGTTAATGTGTTAAAATCCAAAGGCAAAGGTAGAGTTAAGCATGATGAAAGTGTGAATCTCGGTGATTCTGAAGAAGGAAAAGAACAAAAAGTTAGAGGTTTAGGGGATGGGGAAGGAAGAGTTTCTATGAATCAAACAGAAGAGAAAGTGATCAAGAACAAAGGAAGAGATTATAAAGATAAAGCCAGCGTCCAAAATGACAAGAAAAAGGCAACAGTTGCTAACAAAGGTTTGAATCAGAGGGGCAAAAACACGCTTTTTATGGCGAAGGAATTGCGTTTATTCGAACTCCTTGCTGAATTCTACTTTGGCAACAAAAGTAATACAGTCAAGAATGACTCAACTCCGAATGATGGTGTTAGTCGTTCAGAAACACGGCCACCAACAGCTTCTGTGGAGACACCTCCATTGATATGGAGCCTTAAAAAGAGGGAAGTAGTGCAGAAGACGAAGGAGGAGGAGGAGCTGGCTAAGTTATGGGATGAAATGGAGAGATCGCTGAGAGAAATGGAAGCCGAATCCATGATTGGGAAATATGAAACTAGTCATAAGAATATAAGAAATCCATCCATTAGCTGCGAGCACGACCTTCGTCTCAACGAGGAGATTGGTGTATGCTGCAGATTATGCCACTGGGTCAAAACCGAGATCAAACATGTCTCCGAACCAGTAGTGGATAAATTTCCCAATGAAGTTTCTAGAAAAAGTGCTCCATTTGATGATGTAAATGTCTCGCACTTTGATGGATCTCAGTTCAAACTTTCTGATAATGATTCAAAGTCCAATTTCCTTCACAGTGAAGGCATTGTTTGGGACCTGATACCTGATGTGAAGCATACCTTGTATCCTCACCAACAAGAAGGCTTTGAATTCATCTGGAAAAACTTGGCAGGAAGCATCGATCTTCACAAGTTAAAGAACGCAGATCCTCAACGCGAGGGTGGCTGCATTATCTCGCACGCTCCTGGAACTGGAAAGACTAGATTGACCATAGTCTTTCTCGGAGCTTATCTGAAAGTTTTCCCGAAATGCTTGCCTGTTATAGTTGCTCCAGCGAGTTTATTGCTTACTTGGGAGGAGGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCATAATTTGAGCAATCTTGAGTTATCAGGTAAAGAGCATGGTGATGCCCTTCATTTGCTTAGTCGGTCTAATAGTGCGGATACAACGCGGATGGCAAAACTGATTTCGTGGAACAAAGAAAGGAGCGTTTTAGGAATCAGTTACAATTTGTACGAGAAGTTAGCCGGAGGAGGAGGATCTTATGACGAGAAAAATAAAAAACAAGAAATTATGGGAAATGTTTTACGTGAGAAACCGGGTGTGCTCGTGCTAGATGAAGGACACACTCCGAGAAATAAGACAAGTGGTATTTGGAAGGTGTTGTCGAAGAGTCAAACAAAGAAACGGATTATACTTTCGGGAACTCCTTTCCAGAACAATTTCTTGGAACTTTATAACATTTTGACCTTAGTGAAGCCTTCTTTTGTGTTACCAGATGAGCTAAAAAAGTTTTGCCAGAAGCCGGAACAGAAAAAAGCAACGAAAGAATGGAGTTGGCAACCGGATTCAGGTTCTGATGATAAGATCAAGCAGTTGAAATTGCTTATGGATCCCTTAGTTCATGTACACAAAGGTGCGATCCTTCAAAAGAAGCTTCCCGGGATAAGGAATCGCGTGCTGAGATTGAAACCCGACAGTTTACAGAAGCAAACTATTGACAGCATACAAAGTTCTCAGAAAACATTCATCTTTGAGCATAAGCTGACAATGGCATCCATCCATCCATCGCTTTTTCTCGAATGCGATCTTTTAAAAAAGGAGGAATCTGTTGTCGACAAGGACCTGCTAGAAAAGGTCAGATTGGACCCCAACAAAGGCGTCAAAACAAAGTTTTTGGTTGAGTTTGTTAGACTATGTGATGCTGCAAGTGAGAAAGTTCTTGTGTTCAGCCAATTCATCAAACCATTGCGCTTAATTATAGACCAATTAAGCTTGGCTTGTAATTGGACAGAAGGGAAGGAAATGCTGTTCATGGATGGAGAAGTTGATCTTAAAGGAAAGCAATCTCTTATCCATAACTTCAATGATGCAAAATGTCAAGCTAAGATTCTTCTTGCATCGGTTAAAGCTAATTCCGAGGGAATTAGCTTAGTCGGAGCTTCCAGAGTTGTGCTACTGGATGTTGTATGGAATCCGTCTGTCAAACGACAGGCTATCAGCAGAGCGTATCGGATTGGACAGAAGAGGGTTGTATACACTTACCATCTGCTAATTGACGGGACTACCGAGTGCGTGAAACATTGTAAGCAGGCCGAAAAGGACCGGTTATCTGAACTTGTTTTTCAAGGTAAGAATAATGATAATGATGAGTTGGAGAAGAGTGGTGTGGAGTTTGAAGACAGTATTCTTGAGAAAATGATACATCACAGAGAGCTCAAAGGCATGTTTGTTGAGTGA 3276 0.4038 MMVGVSSRTRSKNVPLYGSLSLHGSSKRRKSKEDDTCFAASCSKQRKAKKEPFVLPPDAKVIYIDDENGDDAVEKKSESCAADIKEEVENGEFVDEKPSVVCLDESGESYEEDSDCDESEENESSDEDFSINEVNEVSESDEDGGSSCSSYVDEAKRNSSRKYLEVVAEMVRKVKDDENSDIPKKKIKSSDDEKSEIPKRMKIKSSDDENSEISNKKKIKSSVKTTTGVLEKKGVFHPMEGCCSSSKLDIASETKKEKNVSDVNVLKSKGKGRVKHDESVNLGDSEEGKEQKVRGLGDGEGRVSMNQTEEKVIKNKGRDYKDKASVQNDKKKATVANKGLNQRGKNTLFMAKELRLFELLAEFYFGNKSNTVKNDSTPNDGVSRSETRPPTASVETPPLIWSLKKREVVQKTKEEEELAKLWDEMERSLREMEAESMIGKYETSHKNIRNPSISCEHDLRLNEEIGVCCRLCHWVKTEIKHVSEPVVDKFPNEVSRKSAPFDDVNVSHFDGSQFKLSDNDSKSNFLHSEGIVWDLIPDVKHTLYPHQQEGFEFIWKNLAGSIDLHKLKNADPQREGGCIISHAPGTGKTRLTIVFLGAYLKVFPKCLPVIVAPASLLLTWEEEFKKWDIGVPFHNLSNLELSGKEHGDALHLLSRSNSADTTRMAKLISWNKERSVLGISYNLYEKLAGGGGSYDEKNKKQEIMGNVLREKPGVLVLDEGHTPRNKTSGIWKVLSKSQTKKRIILSGTPFQNNFLELYNILTLVKPSFVLPDELKKFCQKPEQKKATKEWSWQPDSGSDDKIKQLKLLMDPLVHVHKGAILQKKLPGIRNRVLRLKPDSLQKQTIDSIQSSQKTFIFEHKLTMASIHPSLFLECDLLKKEESVVDKDLLEKVRLDPNKGVKTKFLVEFVRLCDAASEKVLVFSQFIKPLRLIIDQLSLACNWTEGKEMLFMDGEVDLKGKQSLIHNFNDAKCQAKILLASVKANSEGISLVGASRVVLLDVVWNPSVKRQAISRAYRIGQKRVVYTYHLLIDGTTECVKHCKQAEKDRLSELVFQGKNNDNDELEKSGVEFEDSILEKMIHHRELKGMFVE* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3636 1091 MobiDBLite consensus disorder prediction 87 159 - -
Psa3g3636 1091 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 1090 IPR044567 GO:0080188
Psa3g3636 1091 MobiDBLite consensus disorder prediction 374 395 - -
Psa3g3636 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 1067 IPR027417 -
Psa3g3636 1091 Coils Coil 415 435 - -
Psa3g3636 1091 Pfam SNF2-related domain 556 857 IPR000330 GO:0005524|GO:0140658
Psa3g3636 1091 CDD SF2_C_SNF 876 1030 - -
Psa3g3636 1091 MobiDBLite consensus disorder prediction 268 300 - -
Psa3g3636 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 772 IPR027417 -
Psa3g3636 1091 Gene3D - 515 814 IPR038718 -
Psa3g3636 1091 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 904 1060 IPR001650 -
Psa3g3636 1091 Pfam Helicase conserved C-terminal domain 912 1019 IPR001650 -
Psa3g3636 1091 MobiDBLite consensus disorder prediction 268 297 - -
Psa3g3636 1091 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 569 767 IPR014001 -
Psa3g3636 1091 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 2 1090 - -
Psa3g3636 1091 MobiDBLite consensus disorder prediction 172 219 - -
Psa3g3636 1091 MobiDBLite consensus disorder prediction 172 224 - -
Psa3g3636 1091 SMART helicmild6 934 1019 IPR001650 -
Psa3g3636 1091 MobiDBLite consensus disorder prediction 374 392 - -
Psa3g3636 1091 MobiDBLite consensus disorder prediction 87 102 - -
Psa3g3636 1091 SMART ultradead3 539 777 IPR014001 -
Psa3g3636 1091 MobiDBLite consensus disorder prediction 106 140 - -
Psa3g3636 1091 Gene3D - 826 1089 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3636 Psa-Chr3 309369742 309373305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3636 914 1049 RAD5 or RAD16-like Gene Family AT5G43530 39.706 1.35e-18 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa3g3636 SNF2_N 8.2e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3636 K10875 - gmx:100812737 840.491