Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3634 ATGGCTCTTAGTGCATTCTCTTATACACTCATCCTTCTAGGTTCACTCTCAATATTCATAGTGACCCCTTCCTATAGTTTTAATCCAAGGAAGCTTGTTAATGTAACTTCATACTCCTCACCTGATTCAGATTGGTCACCTTCAGTGGCCACTTGGTATGGATCTTCCGACGGTGATGGAAGCGAAGGTGGTGCTTGTGGATATGGAAATGCAGTTGGACAATCTCCATTTTCTTCACTGATATCGGCCGGAAGCCCGGCCATCTACGACTCCGGTAAAGGATGTGGTTCTTGTTATGAGGTGAGGTGCACAGGAAATTCTGCATGTTCGGGAAACCCTGTGAGAGTAGTTATCACTGATGAGTGTGCTGGTTGTGGCTCAGATGCTGAATATCATTTTGATTTGAGTGGCACTTCTTTTGGCTCCATGGCAGTTTCAGGTCAAGATCAAGAGCTACGTAATGCTGGAAAAATAAACATGGAACATAGAAGAGTTGAATGCAACTATGCAGGTAGATCAATAGCTTTCCACGTGGACTCCGGATCAAACCATGAATATTTTGCAACATTAATTGAGTACGAGGAAGGGGATGGTGATCTTAACAAAGTTGAAGTGAAGGAAGCACTTGATTCATCTTCTTGGGATACCATGCAACAATCCTGGGGTGCTGTTTGGAAATATGATAAAGGGGCACCACTTCATGCACCATTTTCTATTAGGTTAACTACACTTGAATCTGGAAAGACTATTGTGGCAGAGAATGTGATTCCTGCAGGTTGGATGCCTGGTCAGACTTATAGGTCAATTGTGAATTTTTAA 819 0.4286 MALSAFSYTLILLGSLSIFIVTPSYSFNPRKLVNVTSYSSPDSDWSPSVATWYGSSDGDGSEGGACGYGNAVGQSPFSSLISAGSPAIYDSGKGCGSCYEVRCTGNSACSGNPVRVVITDECAGCGSDAEYHFDLSGTSFGSMAVSGQDQELRNAGKINMEHRRVECNYAGRSIAFHVDSGSNHEYFATLIEYEEGDGDLNKVEVKEALDSSSWDTMQQSWGAVWKYDKGAPLHAPFSIRLTTLESGKTIVAENVIPAGWMPGQTYRSIVNF* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3634 272 PANTHER EXPANSIN-B3 22 272 - -
Psa3g3634 272 Pfam Lytic transglycolase 82 160 IPR009009 -
Psa3g3634 272 Pfam Expansin C-terminal domain 174 257 IPR007117 -
Psa3g3634 272 SUPERFAMILY Barwin-like endoglucanases 35 171 IPR036908 -
Psa3g3634 272 PRINTS Major pollen allergen Lol pI signature 83 94 IPR005795 GO:0005576|GO:0019953
Psa3g3634 272 PRINTS Major pollen allergen Lol pI signature 103 113 IPR005795 GO:0005576|GO:0019953
Psa3g3634 272 PRINTS Major pollen allergen Lol pI signature 144 159 IPR005795 GO:0005576|GO:0019953
Psa3g3634 272 PRINTS Major pollen allergen Lol pI signature 176 191 IPR005795 GO:0005576|GO:0019953
Psa3g3634 272 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576|GO:0019953
Psa3g3634 272 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Psa3g3634 272 SUPERFAMILY PHL pollen allergen 172 268 IPR036749 -
Psa3g3634 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 268 IPR007117 -
Psa3g3634 272 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Psa3g3634 272 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Psa3g3634 272 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Psa3g3634 272 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Psa3g3634 272 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Psa3g3634 272 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Psa3g3634 272 Gene3D - 30 168 IPR036908 -
Psa3g3634 272 Gene3D - 169 272 IPR036749 -
Psa3g3634 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 172 IPR007112 -
Psa3g3634 272 PANTHER EXPANSIN-B2-RELATED 22 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3634 Psa-Chr3 309038604 309040304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3634 24 272 Expansin Gene Family AT1G65680 57.831 1.81e-112 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3634 - - gmx:548090 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3634 3 309038604 309040304 Psa3g3634 3 309038604 309040304 ECH