Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3628 ATGGAAAATGATTCTAATGAAAATTTCCTTAGCACATCAACACCAACATCTTCTAACTCAAATTCATGCACACCTCAAAATAAGTGTAAGAAAAGAGAGAGAAACAATGAAAATGACACAAAACACCCTACATATAGAGGAGTAAGAATGAGAGCATGGGGAAAATATGTATCCGAGATCAGAGAGCCAAGAAAGAAATCAAGAATATGGCTTGGAACATACCCTACAGCTGAAATGGCAGCTAGAGCTCATGATGTAGCTGCTTTAGCCATAAAGGGTCATTCAGCTTACCTTAATTTTCCTAACTTGGCTCAAAATCTTCCAAGGCCTTCAACGACATCACCTAAAGATATTCAAGTTGCAGCTTCAAAAGCAGCAGCTATGGTTTTTGTGGAAATTAAGGATTCTTGTCAAGGTGAAAATGGTCAAGATCAAGTTTCAATTTCAATAGAGAATGTTCAAGACTGTAATTCTAGTTCTCCTTCTTCTACTACTACTACTAATATTACAAATGACGATGATAATGATGATACACTCTTTGATCTACCAGATCTTTTTCCTGATGGAAAAAATGGACTTGTTTCTTATTCTTCTTCTTGGAATTTATGTGCCGTTGATAGTGGACTTCGGCTCGATGAGCAATTTTTATCGTCGTGGGAGTATTACTAG 669 0.3662 MENDSNENFLSTSTPTSSNSNSCTPQNKCKKRERNNENDTKHPTYRGVRMRAWGKYVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQNLPRPSTTSPKDIQVAASKAAAMVFVEIKDSCQGENGQDQVSISIENVQDCNSSSPSSTTTTNITNDDDNDDTLFDLPDLFPDGKNGLVSYSSSWNLCAVDSGLRLDEQFLSSWEYY* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3628 222 Pfam AP2 domain 43 94 IPR001471 GO:0003700|GO:0006355
Psa3g3628 222 PANTHER ETHYLENE RESPONSE FACTOR 20 222 - -
Psa3g3628 222 MobiDBLite consensus disorder prediction 1 26 - -
Psa3g3628 222 MobiDBLite consensus disorder prediction 1 44 - -
Psa3g3628 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 222 - -
Psa3g3628 222 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Psa3g3628 222 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Psa3g3628 222 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Psa3g3628 222 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Psa3g3628 222 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Psa3g3628 222 MobiDBLite consensus disorder prediction 27 44 - -
Psa3g3628 222 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Psa3g3628 222 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3628 Psa-Chr3 308257858 308259158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3628 31 218 AP2-EREBP Transcription Factor Family AT2G44940 52.632 5.30e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g3628 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3628 - - gmx:100792964 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3628 3 308257858 308259158 Psa3g3628 3 308257858 308259158 ECH