Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3617 ATGATTTTTTTCTTCATCTTATTGATGGGATTGGGAAAGACACTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCACCAGTTGTCACAGGGGCCATTTTTGGTTTTATGCCCTTTAAGTGTGACAGATGGTTGGGTGTCTGAGATAGTCAAATATGCCCCTAAACTAGAAGTGTTAAAATATGTTGGTGATAAAGAATATAGGCGCAGTCTACGAATGAAAACACATGAACATGTAACAAGGAAGCCAACACATGATGCCAGTTTGCCTTTTGATGTGCTGTTAACATCATATGACATTGCACTGATGGACAAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATCGATGAAGCCCAAAGGCTAAAAAACCCGTCAAGTGTTTTATTTAATGTTCTCAAAGATGTCTATATCATGCCAAGACGGTTGTTGATGACTGGCACACCTATTCAGAACAACCTTTCTGAATTGTGGGCATTGATGTTTTTTTGCATGCCATCTGTGTTTGGGTCACTAAATCAGTTCCTTTCTACATTCAAGGACATCAGTGATCTTACCTCAGTTAATGATTCTCCAAAGGTTAAGGAGCGGCTTCAAATCCTGAGAAGTGTATTGGCTGCTTTTATGCTTCGACGAACCAAATCAAAGCTTATGGAGTGTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACTGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTCCACATGTCAATACTAAGGAAGGAACTTCCAAAGCTAGTTGCACTATCTTCTGGAACACCAAATCATCAATCACTACAGAATACTGTGATGCAACTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCGGGTATTGAACCCGAACCTTACGAAGAAGGTGAACATCTAGTTCAGGCCAGTGGTAAACTATTGATTCTGGACCAACTTCTTCGAAAGCTACATCAATATGGACACCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTTTCTGGAGTTACGCAAGTATTCTTACGAACGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCAGCTAATATGGGCTTGGATTTTGAAGCTGGCCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCCGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAACCCTCAGGTGGACAAACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGAGCAGAAAGAAAGTTGCAGCTGAGCCTCAATGTAACTGGTGATAATATTCTAGAAAATGAAGATAAAAAATTATCTGCAGTTGGAACCAGTGATTTGAAATCCATCATTGTTGGGTTACGTATGTTTGATCCCAATGAGATCAATGATGGAAAAGACAAGGACATGGACTTGACAGAAATTAATGCAATGGCTGACAAGATAATTGCTATGCGCGATGAACAAATATTTGATAAGGACGATAGGAAATTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATATGATGTCAAGGAAAGAGGTTCTGCTTCTCTCTCTTGTGATCTTGATCTTGATGAGGCTTCTTATCTTTCTTGGGTTAAAAAATTTGAGGAAATTTCTAAATCAAGTTGCGACTCAATCACTGACTTGAGAAGCAGAAGGAACTTAGATGAGGTAAAGAGTAAAAAACTAGAGACTGCAAAGCAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAATGCTGTTGGATACCATTCTCTGAATGTTAAAGACCCTATTAGCCCACCAGATGGGGATGTCATTTTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACAACTCCCTCAAACGTTTCTTCATCTGATCCGGCTATAATCTTTAGCTGTGTTGACACTTCTGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTGACCAAACTTTCATCGAGCATCAGCGATGCATATGAACGGGCTTCTGAACATGGGGATTTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGGCTGTGATGATCAAAATATGGATGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCTTACAACCCAAGGCGTAATGTCCCTCGAAGTGAAACCTCACTTGTCCACTTGGAAAGCTGCTTATCGAAGGCAGCGTTCTCAGCTGCTCAAAATTCTGCATCAATACACATGCCACGGATTGGTTATCAAGATGGATCTGATCGCTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACAACATAAATATATACGTGTATTATTATCGAAGATCACGATAA 2466 0.4031 MIFFFILLMGLGKTLQAISFLSYLKVHQLSQGPFLVLCPLSVTDGWVSEIVKYAPKLEVLKYVGDKEYRRSLRMKTHEHVTRKPTHDASLPFDVLLTSYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDVYIMPRRLLMTGTPIQNNLSELWALMFFCMPSVFGSLNQFLSTFKDISDLTSVNDSPKVKERLQILRSVLAAFMLRRTKSKLMECGSLVLPPLTETTVLVPLVSLQKKVHMSILRKELPKLVALSSGTPNHQSLQNTVMQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHQYGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSNSSANMGLDFEAGQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILENEDKKLSAVGTSDLKSIIVGLRMFDPNEINDGKDKDMDLTEINAMADKIIAMRDEQIFDKDDRKFEVNPRNFLKGYDVKERGSASLSCDLDLDEASYLSWVKKFEEISKSSCDSITDLRSRRNLDEVKSKKLETAKQKAEEKKLSKWNAVGYHSLNVKDPISPPDGDVILDAGSVHFVYGDCTTPSNVSSSDPAIIFSCVDTSGRWGHGGMFDALTKLSSSISDAYERASEHGDLHLGDLHLIRLEDGCDDQNMDGNAPKMVALAVVQSYNPRRNVPRSETSLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASMYNINIYVYYYRRSR* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3617 821 CDD Macro_Poa1p-like_SNF2 648 806 - -
Psa3g3617 821 Gene3D - 8 226 IPR038718 -
Psa3g3617 821 SUPERFAMILY Macro domain-like 649 816 IPR043472 -
Psa3g3617 821 CDD SF2_C_SNF 301 444 - -
Psa3g3617 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 490 IPR027417 -
Psa3g3617 821 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 170 IPR014001 -
Psa3g3617 821 Pfam Helicase conserved C-terminal domain 309 433 IPR001650 -
Psa3g3617 821 Gene3D - 227 539 IPR027417 -
Psa3g3617 821 SMART helicmild6 338 433 IPR001650 -
Psa3g3617 821 PANTHER HELICASE CHR10-RELATED 6 816 - -
Psa3g3617 821 Pfam SNF2-related domain 9 288 IPR000330 GO:0005524|GO:0140658
Psa3g3617 821 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 6 816 - -
Psa3g3617 821 Gene3D Leucine Aminopeptidase, subunit E, domain 1 648 821 IPR043472 -
Psa3g3617 821 SMART ultradead3 1 178 IPR014001 -
Psa3g3617 821 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 312 481 IPR001650 -
Psa3g3617 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 215 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3617 Psa-Chr3 307408280 307417544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3617 9 493 RAD5 or RAD16-like Gene Family AT1G02670 24.144 2.32e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa3g3617 SNF2_N 2.7e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3617 K20092 - gmx:100797182 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3617 3 307408280 307417544 Psa3g3617 3 307408280 307417544 ECH