Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3612 ATGAAAAATAATGGATGTTGTCCTAATGTATTCAATTACTTAGCCCTAGTTGATGGATTATGTAAAGTAGGAAAACCGGAAGATGCAAAAGGGGTTTTGGCTGAGATGAAGAACTTTGGTTTGAAACCTGATACGGTTACCTACACTTCTTTGATCAATTTTTTCTGTAGGAATGGGAAAATTGATGAGGCTATAGAGTTGCTTAAAGAAATGAAGGAAAATGAATGCGAGGTTGATACTGTTACATTCAATGTGATACTCGGAGGCTTGTGCAGAGAAGGTAGATTTGACGAGGCTTTGGATACGATTGAGAAACTCCCACACCAATGTGTCTATTTGAACAAAGAAAAAACATTTGATGAGTTCGTGGATAGATTCGAGCTTCTTGCACCTGAAGCTTTGGAACGTAGTTCTGATGAGGCTACAGAGGCAAGATTGCTACTAGCAGATCGATTTCCTCCAAGGCTCACTTCATCAAATTGCAAGCCCACTATTGTAACTTTTCGACAACACATAAAAGATCAGATCCTTAAGATTCTTAAAGAAAGGTTAAATGAACTTCCTTACACAGTCTTCCAACATCAAGCATTAGAACTATGTGCCGGGAAAGTTGTTGCAGCTTCTGGAGATATGCGAAATGCTCTTTCCATATGCAGGAGTGCAATTGAGATGTTAGAAGCAGAAATTAGAGACTCTGCTTCCAATGTGAATGCTTCAGAAGAGAAATCATCATCAGAATAA 741 0.386 MKNNGCCPNVFNYLALVDGLCKVGKPEDAKGVLAEMKNFGLKPDTVTYTSLINFFCRNGKIDEAIELLKEMKENECEVDTVTFNVILGGLCREGRFDEALDTIEKLPHQCVYLNKEKTFDEFVDRFELLAPEALERSSDEATEARLLLADRFPPRLTSSNCKPTIVTFRQHIKDQILKILKERLNELPYTVFQHQALELCAGKVVAASGDMRNALSICRSAIEMLEAEIRDSASNVNASEEKSSSE* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3612 246 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Psa3g3612 246 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Psa3g3612 246 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Psa3g3612 246 TIGRFAM PPR: pentatricopeptide repeat domain 46 80 IPR002885 -
Psa3g3612 246 TIGRFAM PPR: pentatricopeptide repeat domain 13 45 IPR002885 -
Psa3g3612 246 TIGRFAM PPR: pentatricopeptide repeat domain 81 109 IPR002885 -
Psa3g3612 246 Gene3D Tetratricopeptide repeat domain 1 145 IPR011990 GO:0005515
Psa3g3612 246 Coils Coil 222 242 - -
Psa3g3612 246 Pfam PPR repeat 4 37 IPR002885 -
Psa3g3612 246 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 116 - -
Psa3g3612 246 Gene3D - 156 246 - -
Psa3g3612 246 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 1 116 - -
Psa3g3612 246 Pfam PPR repeat family 43 92 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3612 Psa-Chr3 306624807 306627487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3612 148 232 Core DNA Replication Machinery Family AT2G29680 65.882 4.13e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3612 - - mtr:MTR_3g100600 205.297