Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3603 ATGGTTCGCTTCTCCAGGTCCTCCGCACATCGCCTTCTATACGCACTATGCTCCTCCACCATCACAACCTCTCCATCCCCAACTGGCTCCCTCATCGGCGGCACTTTCCACCTCCGACACTTCTCGGCTGGAAACGTGGCCCGTGCCAAGGCAGCGTCAATTAACAAGGAGCCTTGGTGGATGGAGTCAATGGAAATGATTCGCAACATCGGTATCTCTGCACACATCGATTCCGGGAAGACGACTTTGACGGAGCGGGTACTCTTTTACACTGGTCGGATCCACGAGATCCATGAGGTGAGAGGAAAGGATGGAGTTGGTGCTAAGATGGATTCCATGGCGTTGGAGAGAGAGAAGGGAATCACCATTCAGTCTGCTGCTACTCATTGCACTTGGAAGGACTATAAGATCAACATAATTGACACACCTGGTCACGTTGATTTCACCATTGAGGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTCGTGTTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTACTGTTGATCGGCAAATGAGAAGATATGAGGTTCCAAGACTTGCATTTATTAACAAGCTTGATCGAATGGGAGCAGATCCATGGAAAGTAATAAATCAGGCTAGATCTAAGCTTCGGCATCATAATGCTGCAGTTCAAGTTCCAATAGGTTTGGAAGATGATTTTAAGGGACTTGTTGATCTTGTGAAGCTAAAGGCCTATTATTTTCATGGTTCAAATGGCGAAAAAATTGTCATCGAAGAGGTGCCTTCAGATATGGAAGCGTTGGTGGCTGAAAAAAGACGCGAACTAATAGAAACCGTGTCAGAGGTTGATGATATACTTGCTGAAGCATTTCTTAGTGATGAAGCCATTTCAGATGCTGATCTTGAGGGAGCAATTCGTAGGGCTACCATAGCACAAAAATTTATACCGGTATTCATGGGTAGTGCTTTCAAAAACAAGGGAGTACAGTCACTTCTGGACGGAGTACTTAGTTATTTGCCATGTCCAATTGAAGTCAGTAATAATGCTCTTGACCAGTCTAAGAATGAGGAGAAGATTGAGCTGACTGGAAGTCCTGATGGGCCCCTTGTAGCATTGGCTTTCAAATTGGAGGAAAATAAGTTTGGTCAGTTATCATATCTAAGAATTTATGAGGGCGTCATTCGGAAGGGGGATTTTGTGACTAATGTTAACTCTGGCAAGAAGACCAAGATTTCTCGCTTGGGTCGGATGCATTCTAATGAGTTGCAGGATATTCAGGAGGCCCATGCTGGCGAAATAATTGCTGTATTTGGTGTTGAGTGTGCATCAGGAGATACTTTTACTGATGGGTCGGTTAAATACACAATGACTTCTATGAATGTTCCTGAACCTGTGATGTCTTTAGCTGTACAGCCTGTCTCAAAAGATTCTGGAGGGCAATTTTCGAAAGCTTTGAACCGCTTCCAAAGAGAGGATCCTACTTTCCGTGTTGGCTTGGACCCAGAGAGTGGGCAGACAATCATTTCTGGAATGGGAGAACTGCACTTAGATATCTATGTTGAACGCATTAGGAGGGAATACAAGGTTGATGCTACAGTTGGAAAGCCCCGTGTAAACTTCAGAGAAACTGTTACTCAGCGTGCTGATTTTGATTATTTACATAAGAAGCAATCTGGAGGGCAAGGACAATATGGACGGGTGATTGGGTATATTGAACCACTTCCTACTGAGTCGGGAACTAAGTTTGAATTTGAAAACATGCTTGTTGGCCAAGCTGTTCCATCAAATTTTATCCCTGCAATTGAGAAAGGTTTTAAAGAAGCTGCCAACTCTGGTGCCTTAATTGGACATCCAGTTGAAAATCTCCGAGTTGTCTTGACAGATGGTGCTGCTCATGCTGTTGATTCCAGCGAACTTGCCTTTAAGATGGCTTCTATCTATGCTTTTAGACAGTGTTACGCAGCTTCCAGACCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAAGGAGCTGTTGCTGGTGACCTCAACAAGAGAAAAGGTCTGATTGTTGGCAATGATCAGGACGGGGATGATTCTGTCCTTACAGCTCAGGTCCCTCTTAACAATATGTTTGGGTATTCTACGGCTCTTCGATCAATGACACAGGGAAAGGGTGAATTCACAATGGAATATAAGCAACATTCACCGGTTTCTCATGATGTACAGACCCAATTGATAAACACCTACAAGGGCACTCAGGCAGCTGAATGA 2271 0.4434 MVRFSRSSAHRLLYALCSSTITTSPSPTGSLIGGTFHLRHFSAGNVARAKAASINKEPWWMESMEMIRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGKDGVGAKMDSMALEREKGITIQSAATHCTWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVFCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVINQARSKLRHHNAAVQVPIGLEDDFKGLVDLVKLKAYYFHGSNGEKIVIEEVPSDMEALVAEKRRELIETVSEVDDILAEAFLSDEAISDADLEGAIRRATIAQKFIPVFMGSAFKNKGVQSLLDGVLSYLPCPIEVSNNALDQSKNEEKIELTGSPDGPLVALAFKLEENKFGQLSYLRIYEGVIRKGDFVTNVNSGKKTKISRLGRMHSNELQDIQEAHAGEIIAVFGVECASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFQREDPTFRVGLDPESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFRETVTQRADFDYLHKKQSGGQGQYGRVIGYIEPLPTESGTKFEFENMLVGQAVPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKMASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDLNKRKGLIVGNDQDGDDSVLTAQVPLNNMFGYSTALRSMTQGKGEFTMEYKQHSPVSHDVQTQLINTYKGTQAAE* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3603 756 SMART EFG_IV_2 536 656 IPR005517 GO:0005525
Psa3g3603 756 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 65 342 IPR000795 GO:0003924|GO:0005525
Psa3g3603 756 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 756 IPR045044 -
Psa3g3603 756 CDD mtEFG1_II_like 368 448 - -
Psa3g3603 756 SMART EFG_C_a 658 745 IPR000640 -
Psa3g3603 756 Pfam Elongation factor G C-terminus 659 744 IPR000640 -
Psa3g3603 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 339 IPR027417 -
Psa3g3603 756 SUPERFAMILY Translation proteins 306 458 IPR009000 -
Psa3g3603 756 Gene3D - 54 344 IPR027417 -
Psa3g3603 756 SUPERFAMILY EF-G C-terminal domain-like 658 749 IPR035647 -
Psa3g3603 756 TIGRFAM EF-G: translation elongation factor G 64 750 IPR004540 GO:0003746|GO:0005525|GO:0006414
Psa3g3603 756 CDD EFG_III 461 536 IPR009022 -
Psa3g3603 756 Pfam Elongation factor Tu GTP binding domain 67 339 IPR000795 GO:0003924|GO:0005525
Psa3g3603 756 Gene3D - 541 746 IPR014721 -
Psa3g3603 756 TIGRFAM small_GTP: small GTP-binding protein domain 68 240 IPR005225 GO:0005525
Psa3g3603 756 PRINTS GTP-binding elongation factor signature 69 82 IPR000795 GO:0003924|GO:0005525
Psa3g3603 756 PRINTS GTP-binding elongation factor signature 118 126 IPR000795 GO:0003924|GO:0005525
Psa3g3603 756 PRINTS GTP-binding elongation factor signature 138 148 IPR000795 GO:0003924|GO:0005525
Psa3g3603 756 PRINTS GTP-binding elongation factor signature 154 165 IPR000795 GO:0003924|GO:0005525
Psa3g3603 756 PRINTS GTP-binding elongation factor signature 190 199 IPR000795 GO:0003924|GO:0005525
Psa3g3603 756 CDD mtEFG1_C 661 738 IPR035649 -
Psa3g3603 756 Hamap Elongation factor G [fusA]. 63 749 IPR004540 GO:0003746|GO:0005525|GO:0006414
Psa3g3603 756 SUPERFAMILY EF-G C-terminal domain-like 458 535 IPR035647 -
Psa3g3603 756 Gene3D - 662 732 - -
Psa3g3603 756 SUPERFAMILY Ribosomal protein S5 domain 2-like 535 657 IPR020568 -
Psa3g3603 756 Pfam Elongation factor Tu domain 2 381 447 IPR004161 GO:0005525
Psa3g3603 756 CDD EF-G 69 341 - -
Psa3g3603 756 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 756 - -
Psa3g3603 756 Gene3D Translation factors 348 466 - -
Psa3g3603 756 Pfam Elongation factor G, domain IV 535 655 IPR005517 GO:0005525
Psa3g3603 756 Gene3D Elongation Factor G (Translational Gtpase), domain 3 467 540 - -
Psa3g3603 756 CDD EFG_mtEFG1_IV 539 654 IPR005517 GO:0005525
Psa3g3603 756 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 111 126 IPR031157 -
Psa3g3603 756 Pfam Elongation Factor G, domain III 460 534 IPR041095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3603 Psa-Chr3 305331005 305351749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3603 383 543 Eukaryotic Initiation Factors Gene Family AT3G22980 23.596 2.26e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3603 K02355 - gmx:100783315 1337.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3603 3 305331005 305351749 Psa3g3603 3 305331005 305351749 ECH