Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3598 ATGGACTTTGGAGGGAACATGTTCTGTCTCAACAACAGAGACCAAAATAATAACACCAACGGTAACAGTAACAGTAACAATAACAGTAACAGTAACGGTTTCACTTGGGGTGGTAGTAGTAGTACTACTACCACCACCACCACTAGTAACAGTGCATGGAACAACAATACTTTCAACGTTGCCGTCAACCCCGGTTTAGCCAACGCGGTGATGTTTCATCCACATGCAAACGAAGGCGGCGTACGGCAGGATCGTGGAAACTACGCGGAGGCGTTCGGTGGAGGTTTGGCTAGGGCTCACGTGATGCCGGACCCGCATCTCACGTGTTTGAAGTTAGGGAAGAGACATTATTTTGAGGATGTGAGTGGTGGAGGCGGTGGTGGTGGTGTGTTGGTGGATAAGAAAGGGAAAGGCTACTGTGGTGGTGGTGGTGGGAAGGCGGCGGCGGGGGTGGGTTTGGCGGTGGGGAGTTCGGTGGCGAGATGTCAGGTGGATGGGTGCCACGTGGGATTGATGAACGCGAAGGAGTATCATAGGAGACATAAGGTTTGTGAGATGCATTCAAAGGCACCAAAAGTTGTGGTGATGGGTTTGGAGCAGAGATTCTGTCAGCAGTGCAGCAGGTTCCATGTTGTGTCGGAGTTTGATGAATCAAAGAGAAGTTGTAGGAGAAGACTTGCAGGGCACAATGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTTCAAGGAGTTCATCACAAAGTGGGTGTGCTCTCTCTCTTCTGTCATCTAGGACTGATTCATGGCTTTCTCCAGATGATCTCTCCGTAAGGTGCAGTGCTGCATTAAGCGAATTGATAGCAGAAAACCGAGCAGCGATCATGGCTAGGCAATATGTCTCCGATAGAGACTGGCATTTACAACAGCATGCAGTGGAAGACTACAAAGAGATCCAACCTGAGTCCAACTATTTCCCGCAACATATGTTTCCGCAGACACACTAA 984 0.4919 MDFGGNMFCLNNRDQNNNTNGNSNSNNNSNSNGFTWGGSSSTTTTTTTSNSAWNNNTFNVAVNPGLANAVMFHPHANEGGVRQDRGNYAEAFGGGLARAHVMPDPHLTCLKLGKRHYFEDVSGGGGGGGVLVDKKGKGYCGGGGGKAAAGVGLAVGSSVARCQVDGCHVGLMNAKEYHRRHKVCEMHSKAPKVVVMGLEQRFCQQCSRFHVVSEFDESKRSCRRRLAGHNERRRKSSHDSVSRSSSQSGCALSLLSSRTDSWLSPDDLSVRCSAALSELIAENRAAIMARQYVSDRDWHLQQHAVEDYKEIQPESNYFPQHMFPQTH* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3598 327 Pfam SBP domain 162 235 IPR004333 GO:0003677
Psa3g3598 327 Gene3D - 154 223 IPR036893 GO:0003677|GO:0005634
Psa3g3598 327 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 38 327 - -
Psa3g3598 327 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
Psa3g3598 327 SUPERFAMILY SBT domain 160 241 IPR036893 GO:0003677|GO:0005634
Psa3g3598 327 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 327 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3598 Psa-Chr3 304499969 304503571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3598 109 235 SBP-box Gene Family AT1G27360 55.906 1.71e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa3g3598 SBP 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3598 - - cam:101496293 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3598 3 304499969 304503571 Psa3g3598 3 304499969 304503571 ECH