Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3579 ATGTCTCGTGAATGTTTAATATGTGACGTAAAATTTCAGATTTCATGCCAAGCTACATGTTTTCATTGGATTTGTGGAACATGTACAATGAATGTTTGGCGGCAAGACTTTCAACGTTGTGAATGTCCAATCTGTGATAAACCTATTAACCTTTTGATTCCAACAGATGTGAACAAGTCTCGTCACAACCCTGAAGTTCTGTCTAAAATACATGCTTATAACCATACGTTTGGTCCTATATCTAATATTCCCATTTTCTTTCTTTATCATGTGCTTTTTAGGGACCTCCTTTTGAATAATGTATCTCCTACTATTTATTTCAATGCTCGTTTCTTCATTGGTATAATAATGATGTTTGTATACATGTACAGTCCTTTGAGAGAGGTATTTGGAACGAGAATACTTCCTCTATTTGGGCTATTATGGATACCACATACTGCTTCCATCTATAAATCAGAACTTTGCATCCGTCACGGGGGTAATTTTAGAAGGTAA 495 0.3535 MSRECLICDVKFQISCQATCFHWICGTCTMNVWRQDFQRCECPICDKPINLLIPTDVNKSRHNPEVLSKIHAYNHTFGPISNIPIFFLYHVLFRDLLLNNVSPTIYFNARFFIGIIMMFVYMYSPLREVFGTRILPLFGLLWIPHTASIYKSELCIRHGGNFRR* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3579 164 SUPERFAMILY RING/U-box 4 52 - -
Psa3g3579 164 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF170-LIKE PROTEIN (DUF 1232) 3 140 - -
Psa3g3579 164 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Psa3g3579 164 PANTHER UNCHARACTERIZED 3 140 IPR038896 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3579 Psa-Chr3 302208011 302209697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3579 30 161 C3H Transcription Factor Family AT1G72175 29.605 4.11e-11 56.2