Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3575 ATGAGCCAGTGTGTTCCTAGTTGGGAAGTTGACGAAAATCCACAATCCCATGCAAGATCAGCCTCTCTTCGCTCCAACTCTAACTCAACTGCCCCTCATGATGTTCCCATGTTGGACTATGATGTTGCAGAACTGACATGGGAAAATGGACAACTTTCTATGCATGGATTAGGGTTACCAAGAGCGCCGGTTAAGCCTTTAACAACCGCGCCTTCCAAGGAAACATGGGAAAAGCCTCGTGGTAGCGGCACCTTGGAGTCCATAGTGAACCAAGCCACTAGCTTTCCACATAACGGTAAACCACCGTTTCTCGCCGCGGGTGGCGGTGTTTGCGGGAACAACATGTTAGTCCCGTGGCTTGACCCACAACGCGCTGCAGCCATTGCTGCTGCTACAGCGACAACCAATAGCATGGTTGTGGATGCGTTGGTTCCCTGCTCCAATCTTAAAAAGGAGCAGAGACTCCATGCACGCGATCCAATTCCTTTAAGAGGTATTGGATCGTGCATGGTTGGTGGCCCCACGCCCGTGGGGTCTTGTAGCGCTGTCAGGGCTACAACGCAGGAGGAAGGCGGGATCTTTGCCGGGGCAAAACGCGGAAGAGTGACACATGTTGCGGGGAGCGGAAGGGATCAGAGTATGAGTAACAGCGCGACTTTTGGGAGGCAAAGCCAACAAGTGACGTTAGATACATATGACAGGGAATTTGGCATGACTGGTTTCACTTCAACTTCAATAGCATCCATGGAAAACACCAGCTCTGATAAGCAGTGCACCAGAACCACAACCGTAGATGACCATGATTCTGTTTGCCACAGTAGACCAACTAGGGATGATGCTGAAGAGGATGATAAAAAGAGAGAAAATAGAAAATCATCGGTGTCCACTAAACGGAGCAGAGCTGCAGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAGAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACGGATAAAGCTTCCATGTTGGATGAGGTGATAGAATATCTGAAACAATTGCAAGCACAAGTGAACATGGTGAATAGATTCAACATGTCATCTATGATGATGCCGATGACCATGCAGCAACAACTTCAAATGTCGATGATGAATCCGATGGGCATGGGAATGGGGCCGATGGGCATGGCTGGGATGGGCATGGGCATGGGGATGGGAATGGGAATGGATATGAACCCTATGAATCGAGCTAACATCCCTGGAATGCCTCAAGTTCTCCACCCTTCAGCATTCATGCATATGCCTGCATGGGATGCTGGCGCCGCTGCCACTGCCACCGACCGACTCCAAGGGCCTCCGGCAACGGGGATGGCTGACCCTATGTCAACATTTTTTGGATGCCAATCACAGCCCATGACAATGGAGGCATATAGTAGGATTGCTGCCATGTATCAGCAGATGCAGCAACAACCTCCAGCAGCACCAGGTTCAAAGGCTTGA 1485 0.4983 MSQCVPSWEVDENPQSHARSASLRSNSNSTAPHDVPMLDYDVAELTWENGQLSMHGLGLPRAPVKPLTTAPSKETWEKPRGSGTLESIVNQATSFPHNGKPPFLAAGGGVCGNNMLVPWLDPQRAAAIAAATATTNSMVVDALVPCSNLKKEQRLHARDPIPLRGIGSCMVGGPTPVGSCSAVRATTQEEGGIFAGAKRGRVTHVAGSGRDQSMSNSATFGRQSQQVTLDTYDREFGMTGFTSTSIASMENTSSDKQCTRTTTVDDHDSVCHSRPTRDDAEEDDKKRENRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVNMVNRFNMSSMMMPMTMQQQLQMSMMNPMGMGMGPMGMAGMGMGMGMGMGMDMNPMNRANIPGMPQVLHPSAFMHMPAWDAGAAATATDRLQGPPATGMADPMSTFFGCQSQPMTMEAYSRIAAMYQQMQQQPPAAPGSKA* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3575 494 PANTHER TRANSCRIPTION FACTOR UNE10 1 490 - -
Psa3g3575 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 363 IPR036638 GO:0046983
Psa3g3575 494 MobiDBLite consensus disorder prediction 260 295 - -
Psa3g3575 494 MobiDBLite consensus disorder prediction 247 315 - -
Psa3g3575 494 CDD bHLH_AtPIF_like 300 355 - -
Psa3g3575 494 MobiDBLite consensus disorder prediction 205 225 - -
Psa3g3575 494 Coils Coil 306 326 - -
Psa3g3575 494 MobiDBLite consensus disorder prediction 208 225 - -
Psa3g3575 494 Pfam Helix-loop-helix DNA-binding domain 305 350 IPR011598 GO:0046983
Psa3g3575 494 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 490 IPR031066 -
Psa3g3575 494 MobiDBLite consensus disorder prediction 1 32 - -
Psa3g3575 494 Gene3D - 295 360 IPR036638 GO:0046983
Psa3g3575 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983
Psa3g3575 494 SMART finulus 306 355 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3575 Psa-Chr3 301705404 301710204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3575 1 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 45.000 1.40e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g3575 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3575 - - mtr:MTR_7g039110 550.051