Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3570 GAGAAGGTGGAGGAGGTGGTGGAGGAGGAGAAGGTGGAGGAGGTGGTGGAGGAGGAGAAGGTGGAGGAGGTGGTGGTGGTGGAGGAGAAAGTGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAAGAAGAAAATGGGCTGGGAGGAGGTGGATTTGGAAATGGATTGGCAAGAATATGACAATGTGCTGGCAGAGATGGTGAGAGAAGCCAAGGGTCAAAATAGTAATAATGAGGAGGTAAAGATTCATAATAGTTCATCTTCTGTAAACAATGATGAATTGGCGCATGCGGTTGATGGTAACATAAGAACCTCTAATGCCTTCAAGAAAAAGGGTTCTTTTGTTCCAATGGAGGCTCCTTCTTCTAAACTGCATGAAACATCAGAGACTCTGACATCAAAAGGTGTGCAAATGAGAGTGAAAGATGTAGATAATCATAATGTTTATGTTGCCAAATCCAAATCCAAATCCAAATCCAAAGACAGTGTTAAACCTAAAGAAATTGTTATTCTTGAGGATGAAAGTGATTCTTCTATTCAAGCAAAACCGAAGAAGACTAAGGATTCAGATAAACAGGAAAAGATGGAGATGAAGGGAAGGGATTATAAAGGTAGAGCTAACACCCATAGTGGCGAGAAGAAGGAATCCATTGATAAAAATGGCTTGAATCAAAGGGGAAAAAGCAGAGTTTTTATGCCGAAGGAGTTGCGATTAGTCGAACTCCTTGCTGAATACTATTGGGGAAACAAGAATAATAAAGTTCAGAATGATTCACCTGTGTTGGAGATGAAAGATGTTATTCGACATGATACACGCCCACCACCTGTTTGTAACGAGACAGCTCCATTGATATGGAGCCTTAAAAAGGTGGAGAAAGTGCAAAAGACCAAGAGCCAGGAAGAGGAGGAAGTACTATGGGATAAAATGGATACAAGCCTTAGAGAACTTGAAGCTGAATCCATGATCGGAAATTTGGGGATCAATGAAGCTTCTCAGGAAAAAATCGGAAGTCCATTCTCTGACTGTGAACATGACATCTATCTCGACGAAGAGATTGGTGTATATTGCAGGCGGTGTGGTTGGGTTGTCACTGATATTAAAGATGTCTCACCACAAGTGATTGATAAATTTCCCTATGAAGGATCGGGACAAAGGGCTTCGTTTGGCGATGTAAATGTCTCACACTTTCATGACTCACAGTTCAATGTTTCTGATCATGACTCAGGGACTAATTTCTCTTACGATGAAAGAACAGTTTGGGACCTAATTCCTGATGTAAAACCGACCTTATATTCTCACCAACAAGAAGGTTTTGAGTTCATTTGGAATAAGTTAGTAGGAAACGTCGAGCTTCAAGGGTTAAAGAATGTCAATCTTCAAAGGGAGGGTGGTTGCATTATTTCACATGCTCCTGGAACTGGAAAGACAAAGCTGACAATAATGTTTCTCAAGGCTTATTTAAAAGTTTTTCCGAAATGCTTGCCGGTCATTGTTGCTCCTGCAGGTCTGTTGCTTACTTGGGAAGACGAATTCAAAAAATGGGACATAGGTGTTCCATTTCACAATTTGAACAATCCTGAGTTATCTGTTAAAGAGCATGATGATGTTGTTAATGCAACTAATTGGTCTAATTCACGACGGCATAGTATGGACGAGACACGAATGGCAAAACTGATTTCGTGGTTCAAAGAAACAAGCATTCTGGGAATCAGTTACAGTTTGTTCAAGGTGCTAGCCGGCGAAGAAGGGGAATGCAAAGATAAGAAAAAGAATAAACATGCGAGAGGATGGGAATGGGAATCTGAAGATAAGAAAGAGAATAAACAGAAGAGAAAAGAAAACAGTTATATGAGGAAGGCTTTGCTTGAAGCTCCTGGTTTGTTGGTTCTAGATGAAGGACATACGCCAAGAAATGCAAGAAGTAATGTTTGGAAGGTGTTGTCAAAAATTCAAACAAAGAAGCGAATTATGCTTTCTGGAACTCCTTTCCAGAATAATTTCTTGGAACTGTACAACACTTTCAGCATTGTGAAGCCTTCTTTTCCTAACACTATACCGCACAAGCTCAAAAGGTTTTGCCAGAAACATAAGAAAGCAGCAAACGAATGGAGTTGGGAACCGGTTACTGGAAACTGTACAACAGGAAATCCTTCTGATGATAAGATCAAGCATTTGAAGTTGCTAATGGATCCTTTTGTTCATGTTTACAAAGGCGCGATTCTTCAAAAGAAGCTTTTCGGGTTAAGAGAGTGTGTTCTTCGTTTGAAGCCTGACAGCTTTCAGAAGCAAATTCTTGAGAGCATTAAAAGTTCTCAGAACATATTAAACTTTGAGCGTAAGCTTATACTGGCATCGGTCCATCCGTCTCTATTCCTTGAATGCAAACTTTTGGAAGAAGAAGAATCTGTTGTCGACAAGGAACAGCTAGAAAAACTTAGATTGGATCCATATCTCGGCGTCAAAACAAAATTTTTGGTGGAATTTGTTAATCTTTGTGTTGCTGTTAATGAAAAAGTTCTTGTGTTCAGCCAATTCACCGCCCCTTTACGCTTAATTGTAGAGCAATTAAGCTCATCCTTTAATTGGGCTGAGGGGAAGGAAATACTCTACATGGATGGCACAATTGATCTGAAGGAAAAGCAGTCTTTAATCCACAACTTCAATGATGCAAACAGCAAAGCTAAGATTGTACTTGCATGTACAAAAGCCTGTTCCGAGGGAATTAGCTTAGTTGGAGCGTCAAGAGTTGTGCTACTTGATGTTCTATGGAATCCTTCTGTCGAGCGACAGGCTATCAGTAGAGCATATAGGATTGGACAAAAGAGAGTTGTGTACACTTACCATCTGCTCACGCACGAGACTACCGAGTGCGTCAAATATTTCAAACAGGCAGAAAAGGACCGGCTGTCTGAACTAGTATTTTCAGATAATGACGGGGGCAAAAACCGTTCGATGAACTTTGAAGATGGTATTCTTGATCTAATGCTTCAGCATGAAAAACTTAAAGACATGTTTGTTGATTGTGTGGTACAGCCGAAGGAAAGAGATTTGGTGGAGAGTTATTATTATTGA 3072 0.4056 EKVEEVVEEEKVEEVVEEEKVEEVVVVEEKVEEEEEEEEEEKKKMGWEEVDLEMDWQEYDNVLAEMVREAKGQNSNNEEVKIHNSSSSVNNDELAHAVDGNIRTSNAFKKKGSFVPMEAPSSKLHETSETLTSKGVQMRVKDVDNHNVYVAKSKSKSKSKDSVKPKEIVILEDESDSSIQAKPKKTKDSDKQEKMEMKGRDYKGRANTHSGEKKESIDKNGLNQRGKSRVFMPKELRLVELLAEYYWGNKNNKVQNDSPVLEMKDVIRHDTRPPPVCNETAPLIWSLKKVEKVQKTKSQEEEEVLWDKMDTSLRELEAESMIGNLGINEASQEKIGSPFSDCEHDIYLDEEIGVYCRRCGWVVTDIKDVSPQVIDKFPYEGSGQRASFGDVNVSHFHDSQFNVSDHDSGTNFSYDERTVWDLIPDVKPTLYSHQQEGFEFIWNKLVGNVELQGLKNVNLQREGGCIISHAPGTGKTKLTIMFLKAYLKVFPKCLPVIVAPAGLLLTWEDEFKKWDIGVPFHNLNNPELSVKEHDDVVNATNWSNSRRHSMDETRMAKLISWFKETSILGISYSLFKVLAGEEGECKDKKKNKHARGWEWESEDKKENKQKRKENSYMRKALLEAPGLLVLDEGHTPRNARSNVWKVLSKIQTKKRIMLSGTPFQNNFLELYNTFSIVKPSFPNTIPHKLKRFCQKHKKAANEWSWEPVTGNCTTGNPSDDKIKHLKLLMDPFVHVYKGAILQKKLFGLRECVLRLKPDSFQKQILESIKSSQNILNFERKLILASVHPSLFLECKLLEEEESVVDKEQLEKLRLDPYLGVKTKFLVEFVNLCVAVNEKVLVFSQFTAPLRLIVEQLSSSFNWAEGKEILYMDGTIDLKEKQSLIHNFNDANSKAKIVLACTKACSEGISLVGASRVVLLDVLWNPSVERQAISRAYRIGQKRVVYTYHLLTHETTECVKYFKQAEKDRLSELVFSDNDGGKNRSMNFEDGILDLMLQHEKLKDMFVDCVVQPKERDLVESYYY* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3570 1023 Gene3D - 402 709 IPR038718 -
Psa3g3570 1023 MobiDBLite consensus disorder prediction 28 49 - -
Psa3g3570 1023 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 11 1020 IPR044567 GO:0080188
Psa3g3570 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 977 IPR027417 -
Psa3g3570 1023 Coils Coil 17 50 - -
Psa3g3570 1023 SMART helicmild6 854 939 IPR001650 -
Psa3g3570 1023 MobiDBLite consensus disorder prediction 589 613 - -
Psa3g3570 1023 MobiDBLite consensus disorder prediction 28 42 - -
Psa3g3570 1023 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 11 1020 - -
Psa3g3570 1023 MobiDBLite consensus disorder prediction 139 222 - -
Psa3g3570 1023 Gene3D - 748 1016 IPR027417 -
Psa3g3570 1023 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 827 980 IPR001650 -
Psa3g3570 1023 Pfam Helicase conserved C-terminal domain 832 939 IPR001650 -
Psa3g3570 1023 Pfam SNF2-related domain 456 775 IPR000330 GO:0005524|GO:0140658
Psa3g3570 1023 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 456 680 IPR014001 -
Psa3g3570 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 698 IPR027417 -
Psa3g3570 1023 CDD SF2_C_SNF 818 950 - -
Psa3g3570 1023 MobiDBLite consensus disorder prediction 113 225 - -
Psa3g3570 1023 SMART ultradead3 426 692 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3570 Psa-Chr3 300914205 300918107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3570 836 995 RAD5 or RAD16-like Gene Family AT5G05130 36.025 6.93e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa3g3570 SNF2_N 1.4e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3570 K10875 - gmx:100806733 845.499