Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3565 ATGGACATCTTCAAAGCAATTGCTAAACAAGAAGTTGTAGCTCATGGTAGTGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTACAATCAGCTCATCTCATCGGCACAAAATTTATCTAATCTCTTGTGTGAAAATGATGTGAAGGGAAATCTTGGAGGAGCTCGAATAGGAATTGTAGTTAAGCCATCTGCCGAATTTGTTGCCAGAATACTTGCAACTTGGTTTAGCGGAGGTGTTGTTGTACCACTTGCACTCAGCTATCCAGAAGTAGAGCTCCTGTATGTGATGAATAATTCGGATGTGTCTACAATATTGAGTACTGGAGATCATAGTGAGTTAATGCAAAACATTGCCAATAAAACATCTTCTCGGTTTTTTCATATTCCGCCCGTTCCTAATAAGTCCTCCGAGAAGAGCAACAACGGACATTCAAAAAATGGAGAAAGTGATGCAGATAGAATTTTCCTGAAAAACATTGAAAGATCAAGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACAGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCCTTGATCAGGTCCAAGCCTTGACAAAAGTGTGGGAGTACACATCAGCTGACCGGTTTTTGCATTGTCTACCATTACATCATGTCAATGGGCTTTTCAATGGTTTATTCGTCCCTGTCTACGTCAGTTCCACGGTTGAGTTTCTTCCGAAATTTAGTGTCAGTGGAATTTGGAAGAGATTGCGTGAGTCATATCCAACTGAAGGATATGAGGATGGTGATGCTATAACTGTATTCATCGGAGTTCCAACTATGTACACTCAATTAATACAAGCCACTTCTGCATCTAGTGCAAGGAACTTGCGTCTAATGATGTGTGGGTCCTCTGCACTTCCTCAACCTGTTATGCAAGAATGGGAATCCATCACCGGACATCGCTTATTGGAGCGATATGGCATGACTGAATTTGTCATGGCACTGTCAAATCCTTTGAAAGGTGAGCGTAAAGCAGGCACCGTTGGCAAACCATTACCTGGTGTGCAGGTCAAGATTCTTGCAGATGAGGAGCATGAGAGTGAGGAATCTGGGCTTGGCGAGCTTTGCGTTAAAAGCCCTTCATTGTTTACAGAATATTATAAACTTCTTGAGGTAACGAAGGAATCATTTACAGACGATGGATTCTTTAAGACTGGAGATGCTGTCACTACAGATAAAGATGGATATTTCATCATTTTAGGACGTAAGAACGTTGATATCATCAAGAACGGTGGATATAAGCTCTCTGCATTAGAAATTGAATCAGTAATAGTAGAGCATCCAAATGTCTCAGAATGTTGTGTTTTGGGAGTACCAGACAAAGACTACGGAGAAATTATTTGTGCAATTATCGTGCCAGCTGTGAAGAGCGAAGAAAAGGCAAAACCTGCAACACTTCCACTTCGAGGGTGA 1455 0.4131 MDIFKAIAKQEVVAHGSVAIRADQKSYSYNQLISSAQNLSNLLCENDVKGNLGGARIGIVVKPSAEFVARILATWFSGGVVVPLALSYPEVELLYVMNNSDVSTILSTGDHSELMQNIANKTSSRFFHIPPVPNKSSEKSNNGHSKNGESDADRIFLKNIERSSEDPALILYTSGTTGKPKGVVHTHRSILDQVQALTKVWEYTSADRFLHCLPLHHVNGLFNGLFVPVYVSSTVEFLPKFSVSGIWKRLRESYPTEGYEDGDAITVFIGVPTMYTQLIQATSASSARNLRLMMCGSSALPQPVMQEWESITGHRLLERYGMTEFVMALSNPLKGERKAGTVGKPLPGVQVKILADEEHESEESGLGELCVKSPSLFTEYYKLLEVTKESFTDDGFFKTGDAVTTDKDGYFIILGRKNVDIIKNGGYKLSALEIESVIVEHPNVSECCVLGVPDKDYGEIICAIIVPAVKSEEKAKPATLPLRG* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3565 484 Gene3D - 4 416 IPR042099 -
Psa3g3565 484 PANTHER ACYL-COA SYNTHETASE 1 470 - -
Psa3g3565 484 SUPERFAMILY Acetyl-CoA synthetase-like 13 468 - -
Psa3g3565 484 CDD MCS 17 484 - -
Psa3g3565 484 Pfam AMP-binding enzyme C-terminal domain 433 470 IPR025110 -
Psa3g3565 484 PANTHER MALONATE--COA LIGASE-LIKE 1 470 - -
Psa3g3565 484 ProSitePatterns Putative AMP-binding domain signature. 170 181 IPR020845 -
Psa3g3565 484 Gene3D - 422 481 IPR045851 -
Psa3g3565 484 Pfam AMP-binding enzyme 15 418 IPR000873 -
Psa3g3565 484 PRINTS AMP-binding signature 165 176 IPR020459 -
Psa3g3565 484 PRINTS AMP-binding signature 177 185 IPR020459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3565 Psa-Chr3 300817695 300819179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3565 147 466 Monolignol Biosynthesis Gene Families AT1G20500 26.748 1.35e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3565 K18660 - gmx:100813324 724.931