Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3557 ATGGACCCATCACATCTGATGTTTCCTAAAAGAGAGAGAGACTCACAATATCAATTAAGTTCAAAGTGTCGAATCACCCAAAATGATGAGCTCTCTTCTTTTGGAACAAGCCCGCAACATCAACCATTTCAAGTAACCTATAATTGTGGACCATCTTTTTCTAAAACGGGCCTACAACTTAAACCACGTGGACCTTCCTCTTCTAAAACGGGCTCACAACTTAAACCATTTCAAGTAAACCAAAATTGTAAAGCGTCCTCTTCTAAACCATTTAAAGTCTCCAACAAGATAATATCTTCTGGAAACTTTAACACTAAGAAAACATCCCCAAAGGTTCAAAGAACCACGGAACTTAAGAATACTAACTCACCACTATTCAAAATCTCCAATAAGAAAGATGGAGCTAAGCAAAAACCTTTACGATGTCATTCTGATGATGCATCTTCAAGTTACATAATTGACAAAGAGAAACAAACCACAACCTTCGAAAACCAGTCTTCGTTGATATCTCATAGCAGGGCAAAGAACAAAGTAGAATGTGCATTGAAGCTTTTCCAAACCTATGTTAGTGAATCTAATCTTTTTGGTTATTCAATTCCTATAGAAGCGTCAAGAATTTTGAAGCGCAGAGGCAAGTTTATTCATGACGGGAAAAAGATTATAGGAGATGTCCCTGGAATAGAAGTTGGCGATGAGTTTCAGTATTTTGAAGTACTCAACGTTGTTGGTCTCCATCGTAAGATCTTCAATGGAATTGATCATGTGAGATGCAATGGGATGTTTATTGCAACTAGCGTTGTTTCATGTCGATTATATGATGATAAATTGGATGATGCAGAATTGGTGATTTCTACAGGAGAACAAGGTTACAAGTTTCTTTTGGTTAAATCACCTGATCAGAAAAAGGTTGCTTGCAATGATATGAGGAAGCGTAAACAAATTCTTAAAAGGGAAAAGTGTTTGAATTATTTTGAAGATATTTCTCACGGAAAAGAGGATTTTCATATACCTATGATTAATTGTGTAGATTCTGAAGGTGTTCCAAATTTTCAATATGTTACTCATATGGTTAATCTTGAACGGTATAAGTCTAAAAAGTATAGTCCTCTTAAAGGCAATGTTGGGTGTGAATGTGTTGGTAATTGTTCTGATTCTGATAAATGTTCTTGTGCTATGAAGAATAGAGGAAAATTTCCATTTAATAGGAATGGAATTGTTGAGGAAACAAAAAAGGACATGATTTATGAGTGTGGTCATTTTTGTAAGTGTTCTTCGAATTGTCGTAATAGAGTTTCTCAAAATGGAATTAAATTTCCTCTTGAGATTTTCAAGACTGAGACAAAAGGGTGGGGTGTGCGATCAAAAAAGAAAATTCCTTCAGGAAGTTTTATATGTGAGTATTTAGGTGAAATGATTGAAGATGAGCAAGCTGTGAAAATGATCGACAACGACGAGTATCTATTTAACATTGGTAACACAAATCACAAGGATGGTGTGTTTACAATTGATGCTTCTAAGTATGGTAATATGGCGAGATTTATCAACCATAGTTGTTCTCCGAATTTGTTTTGTTTGAATGTTCTTTTTGATCATGATGATGTTAGGATTCCACACATCATGCTATTTGCAGCTGAGGACATTCCACGAAAGACAGAGCTGACCTACCATTATAATTATAAAATAGATCAAGTGGTTGATAATGGAGTTGTAAAAAAGAAGTATTGCTATTGTGGAGCCTCCAACTGCATTGGTAGACTGTATTAA 1764 0.3526 MDPSHLMFPKRERDSQYQLSSKCRITQNDELSSFGTSPQHQPFQVTYNCGPSFSKTGLQLKPRGPSSSKTGSQLKPFQVNQNCKASSSKPFKVSNKIISSGNFNTKKTSPKVQRTTELKNTNSPLFKISNKKDGAKQKPLRCHSDDASSSYIIDKEKQTTTFENQSSLISHSRAKNKVECALKLFQTYVSESNLFGYSIPIEASRILKRRGKFIHDGKKIIGDVPGIEVGDEFQYFEVLNVVGLHRKIFNGIDHVRCNGMFIATSVVSCRLYDDKLDDAELVISTGEQGYKFLLVKSPDQKKVACNDMRKRKQILKREKCLNYFEDISHGKEDFHIPMINCVDSEGVPNFQYVTHMVNLERYKSKKYSPLKGNVGCECVGNCSDSDKCSCAMKNRGKFPFNRNGIVEETKKDMIYECGHFCKCSSNCRNRVSQNGIKFPLEIFKTETKGWGVRSKKKIPSGSFICEYLGEMIEDEQAVKMIDNDEYLFNIGNTNHKDGVFTIDASKYGNMARFINHSCSPNLFCLNVLFDHDDVRIPHIMLFAAEDIPRKTELTYHYNYKIDQVVDNGVVKKKYCYCGASNCIGRLY* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3557 587 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 87 287 - -
Psa3g3557 587 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 285 585 - -
Psa3g3557 587 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 285 585 - -
Psa3g3557 587 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 87 287 - -
Psa3g3557 587 Pfam SAD/SRA domain 221 296 IPR003105 -
Psa3g3557 587 SMART set_7 438 564 IPR001214 GO:0005515
Psa3g3557 587 ProSiteProfiles SET domain profile. 438 558 IPR001214 GO:0005515
Psa3g3557 587 SMART PostSET_3 571 587 IPR003616 -
Psa3g3557 587 Pfam Pre-SET motif 327 430 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa3g3557 587 Gene3D - 219 319 IPR036987 -
Psa3g3557 587 ProSiteProfiles YDG domain profile. 222 371 IPR003105 -
Psa3g3557 587 Pfam SET domain 449 558 IPR001214 GO:0005515
Psa3g3557 587 SUPERFAMILY SET domain 317 564 IPR046341 -
Psa3g3557 587 SUPERFAMILY PUA domain-like 204 293 IPR015947 -
Psa3g3557 587 Gene3D SET domain 320 587 IPR046341 -
Psa3g3557 587 ProSiteProfiles Pre-SET domain profile. 374 435 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa3g3557 587 SMART preset_2 324 422 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa3g3557 587 MobiDBLite consensus disorder prediction 60 85 - -
Psa3g3557 587 SMART G9a_1 217 344 IPR003105 -
Psa3g3557 587 ProSiteProfiles Post-SET domain profile. 571 587 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3557 Psa-Chr3 300427351 300429801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3557 325 587 EF-hand Containing Proteins AT5G13960 39.465 3.99e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa3g3557 SET 7.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3557 K11420 - cam:101497063 397.127