Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3544 ATGGCTCTTACTTTAGGAAATGCATTTTCTCATACACTCATCTTTGTAGGTTCACTCTTAATATTCATAGTGACCCCTTCTTCTTGTTTTAAGCCCAAAAATTTTGTTAGTTTTACTTCGAACTTCTCTTCTGATTCAGATTTTCAATCTTCAATGGCTACTTGGTATGGACCTCCAAATGGTGATGGGAGTGAAGGTGGTGCTTGTGGATACGAAAAGGCTGTTGGTTTACGTCCATTCAATTCAATGATATCAGCCGGAAACCCTTTCATCTACAAATCAGGCAAAGGCTGTGGTTCATGTTATCAGGTGAAGTGTACGGGAAATCCTGCTTGCTCAGGCAACCCTATTAATGTAGTTATCACGGATGAGTGTCCAGGTTGTGATCATTATTTTGATTTGAGTGGAAAAGCTTTCGGTTCCATGGCAATTTCAGGTCAAGGTGACAAGCTACGCAATGCTGGAAAAGTACCTATCCAATATCAAAGAGTTGCATGCAACTACCCTGGTGTGTCCATAACTTTCCATGTTGAATCTGGATCTACCCAATATTATTTTGCAACTGTTATTGAATATGAGAATGGGGATGGTGATCTTAAAACAGTTGAACTCAAAGAAGGAAATTCGGTAGCTTGGGAAGCTATGCAACAATCATCGGGTGCTATTTGGAAAGTTAATAAAGGGACACCATTAAGTGCACCATTTTCTATTAGACTAACAACAATTGAGTCTGGAAAAATGTTTGTGGCTAATAATGTGATCCCTGTAGGGTGGAAGCCTGGTCAAACTTATCGAGCAATTGGAAATATTAATTAA 816 0.3909 MALTLGNAFSHTLIFVGSLLIFIVTPSSCFKPKNFVSFTSNFSSDSDFQSSMATWYGPPNGDGSEGGACGYEKAVGLRPFNSMISAGNPFIYKSGKGCGSCYQVKCTGNPACSGNPINVVITDECPGCDHYFDLSGKAFGSMAISGQGDKLRNAGKVPIQYQRVACNYPGVSITFHVESGSTQYYFATVIEYENGDGDLKTVELKEGNSVAWEAMQQSSGAIWKVNKGTPLSAPFSIRLTTIESGKMFVANNVIPVGWKPGQTYRAIGNIN* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3544 271 SUPERFAMILY PHL pollen allergen 172 265 IPR036749 -
Psa3g3544 271 Pfam Lytic transglycolase 85 161 IPR009009 -
Psa3g3544 271 SMART dpbb_1 84 161 IPR007112 -
Psa3g3544 271 PANTHER EXPANSIN-B2-RELATED 11 269 - -
Psa3g3544 271 Pfam Expansin C-terminal domain 173 255 IPR007117 -
Psa3g3544 271 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Psa3g3544 271 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Psa3g3544 271 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Psa3g3544 271 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Psa3g3544 271 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Psa3g3544 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Psa3g3544 271 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Psa3g3544 271 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Psa3g3544 271 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Psa3g3544 271 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Psa3g3544 271 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Psa3g3544 271 PRINTS Major pollen allergen Lol pI signature 221 238 IPR005795 GO:0005576|GO:0019953
Psa3g3544 271 Gene3D - 170 268 IPR036749 -
Psa3g3544 271 Gene3D - 32 167 IPR036908 -
Psa3g3544 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 171 IPR007112 -
Psa3g3544 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 266 IPR007117 -
Psa3g3544 271 SUPERFAMILY Barwin-like endoglucanases 38 170 IPR036908 -
Psa3g3544 271 PANTHER EXPANSIN-B3 11 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3544 Psa-Chr3 298473312 298475219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3544 27 271 Expansin Gene Family AT1G65680 53.414 1.43e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3544 - - gmx:548090 371.703