Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3528 ATGGCTACCCAAGAAACATTGCTAGACAAGCCTAGAAAATCCATTCCCAAAACTTTCTGGTTAATCCTCTCTTTAGCTGCTATCATAAGCTCATCAGCCATTATTGTTTCTCATCTCAACAAACCTATATCCTTCCACCTCTCATCAGCTCCCAATCTGTGTGAGCATGCTATAGATACAAAAGCATGCTTAACTCATGTATCAGAAGTACTTCAAGGCCAAACCTTGGCTAACACAAAAGACCACAAATTGAGTACACTCTTGTCCTTATTAACTAAATCCACCACACACATTCAAAAAGCTATGGACACGGTCGACGCTATTAAGCGCCGAATTAACCGACGTAGAGAGGAGACAGCTTTGAATGACTGTGAGCAACTAATGGAGTTGTCCATAGACAGAGTTTGGGACTCAATGTTGACACTAACAAAATATAGCATTGACTCACAACAAGATGCACACACATGGCTAAGTAGTGTGCTCACTAACCATGCAACTTGTTTGGATGGATTAGAAGGTACATCTCGGGTCGTTATGGAAAGTGACATCCAAGAGTTGATATCTAGAGCTAAAACTTCTCTGGCTGTGTTTCTTGCTGTTTTTCCTCAAAAGGGTCATGACCAATTTGTTGATGAAACATTGAATGGGGAATTTCCATCGTGGGTTACAAGCAAGGATAGGAGGTTGTTGGAGTCCTCAGTTGGGGACATAAAGGCCAATGTTGTGGTGGCCACCGATGGGAGTGGGAAGTTCAAGACTGTGGCTGAGGCTGTGGCATCTGCACCAGACAACGGTAAGACAACATATGTTATTTATGTGAAAAGGGGAACATACAAAGAGAATATAGAAATTGGTGCCAAAAAAACAAATGTGATGCTCGTTGGTGATGGTATGGATGCAACAATAATCACAGGCAACTTGAATTTCATCGATGGAACAACCACCTTCAAAAGTGCTACTGTTGCTGCAGTTGGTGATTCGTTTATAGCACAAGACATTTGGTTCCAAAACTCGGCAGGCGCAGTGAAGCACCAAGCAGTGGCTCTCCGTGTCGGGGCAGACAAATCCGTCATCAACCGATGCCGCATTGACGCCTTTCAAGACACTCTTTACGCACATTCCAACAGGCAATTTTACCGTGACTCGGTCATTACAGGTACTATCGACTTCATCTTTGGAAACGCGGCTGTAGTGTTCCAGAAGTGCAAGTTAGTGGCCCGAAAGCCCATGAGCAACCAAAACAACATGTTCACAGCCCAAGGTCGAGAAGACCCGGGTCAGAACACAGGAACTTCAATTCAACAATGTGACCTAACACCAAGCGCAGACCTTAAGCCAGTTGTGGGATCAATCAAAACTTTCCTGGGCCGACCATGGAAGAAATTCTCTAGAACTGTTGTCCTGCAATCCTTTCTCGACAGCCACATTGACCCGACAGGATGGGCGGAATGGGACGCTGCGAGTAAGGACTTTTTGCAAACTCTGTACTATGGAGAGTACATGAACAATGGACCAGGTGCAGGTACGAGCAAGAGAGTGAATTGGCCTGGTTATCATGTCATCACAAGTGCAGCGGAAGCTAGCAAGTTTACAGTCGCACAACTAATTCAAGGTAATGTTTGGTTGAAGAACACAGGGGTGGCCTTTACTGAGGGCCTGTAG 1662 0.4489 MATQETLLDKPRKSIPKTFWLILSLAAIISSSAIIVSHLNKPISFHLSSAPNLCEHAIDTKACLTHVSEVLQGQTLANTKDHKLSTLLSLLTKSTTHIQKAMDTVDAIKRRINRRREETALNDCEQLMELSIDRVWDSMLTLTKYSIDSQQDAHTWLSSVLTNHATCLDGLEGTSRVVMESDIQELISRAKTSLAVFLAVFPQKGHDQFVDETLNGEFPSWVTSKDRRLLESSVGDIKANVVVATDGSGKFKTVAEAVASAPDNGKTTYVIYVKRGTYKENIEIGAKKTNVMLVGDGMDATIITGNLNFIDGTTTFKSATVAAVGDSFIAQDIWFQNSAGAVKHQAVALRVGADKSVINRCRIDAFQDTLYAHSNRQFYRDSVITGTIDFIFGNAAVVFQKCKLVARKPMSNQNNMFTAQGREDPGQNTGTSIQQCDLTPSADLKPVVGSIKTFLGRPWKKFSRTVVLQSFLDSHIDPTGWAEWDAASKDFLQTLYYGEYMNNGPGAGTSKRVNWPGYHVITSAAEASKFTVAQLIQGNVWLKNTGVAFTEGL* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3528 553 Pfam Plant invertase/pectin methylesterase inhibitor 52 185 IPR006501 GO:0004857
Psa3g3528 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 201 IPR035513 -
Psa3g3528 553 PANTHER PECTINESTERASE 22 551 - -
Psa3g3528 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 23 192 IPR006501 GO:0004857
Psa3g3528 553 Coils Coil 98 118 - -
Psa3g3528 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 183 IPR035513 -
Psa3g3528 553 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Psa3g3528 553 SMART PMEI_2 45 196 IPR006501 GO:0004857
Psa3g3528 553 Pfam Pectinesterase 240 539 IPR000070 GO:0030599|GO:0042545
Psa3g3528 553 Gene3D - 234 553 IPR012334 -
Psa3g3528 553 PANTHER PECTINESTERASE 22 551 - -
Psa3g3528 553 SUPERFAMILY Pectin lyase-like 238 552 IPR011050 -
Psa3g3528 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Psa3g3528 553 CDD PMEI-like_4 43 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3528 Psa-Chr3 296486601 296489600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3528 3 553 Carbohydrate Esterase AT1G11580 54.064 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3528 K01051 - gmx:100815836 843.573