Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3503 ATGCGCAACTTCACTTCCGATCAAAGATCAAATGTCGTTGGTATTTCACAGTCTCTAGCTATGGCATATGTTATGGATCAGAAAGCAATGTTACTTCAGCAATCAACATGGAAAAATAATGTCAGGATTAATAATTTGGTTGAGCAAATCCATGGTCCACTTTCAAGCATTCAATCCTTGAGTAAAATCCTGTCTACACAAACAAAGAAAAGTCATATTTCACATGACATTGTTGAGGATATCTTGGTGCTAGGTGATCGTTTGAGGGATGTTCTCCATCAACTTCAGGATGTTGTATATGTGACGAAGACTAATATTATGCGCCACAATGAAGAAGCAATCAAGAAAATGAATCACATGCTTGCTGAATCAGAAAAAACTCAATTGTTAGATAGTTCTCTAGTGGACAAGCTGCTTGTGGAATGCAACTTTCCATCTATATGCATTCATTCTGGAATGTCCCAGGAAGAAAGGTTGAAGCGTTATAAAGGTTTTAAGGAGGGACATACCAGGATTCTTGTAGCAACCGATTTGGTTGGCAGAGGAATTGACATTGAACGCGTGAATATTGTGACAAACTATGACATGCCTGACTCTGCAGACACATACTTACACAGAGTTGGCCGAGCTGGAAGGTTTGGCACCAAAGGCCTTGCAACTACATTTGTTTCATGTTCACCCGATGTTGACGTTCTCAATAATGTTCAGTCCCGGTTTGAGGTGGATATGAAACAACTTCCTGAGCAGATTGATACATCTACATACATGCCATCACTTTCGTCCGGAAATCCACCTCAAGCTGCTGCTGCTGTTGCGGCAACCAGTTCGCCTAATGAAACCGCCGACTCAATTACACAAACTGACCAAGGAAAATCTTCAA 880 0.4091 MRNFTSDQRSNVVGISQSLAMAYVMDQKAMLLQQSTWKNNVRINNLVEQIHGPLSSIQSLSKILSTQTKKSHISHDIVEDILVLGDRLRDVLHQLQDVVYVTKTNIMRHNEEAIKKMNHMLAESEKTQLLDSSLVDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVTNYDMPDSADTYLHRVGRAGRFGTKGLATTFVSCSPDVDVLNNVQSRFEVDMKQLPEQIDTSTYMPSLSSGNPPQAAAAVAATSSPNETADSITQTDQGKSS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3503 293 CDD SF2_C_DEAD 137 223 - -
Psa3g3503 293 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 134 253 - -
Psa3g3503 293 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 134 253 - -
Psa3g3503 293 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 94 254 IPR001650 -
Psa3g3503 293 MobiDBLite consensus disorder prediction 258 293 - -
Psa3g3503 293 SMART helicmild6 133 214 IPR001650 -
Psa3g3503 293 Pfam Helicase conserved C-terminal domain 127 214 IPR001650 -
Psa3g3503 293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 249 IPR027417 -
Psa3g3503 293 Gene3D - 87 260 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3503 Psa-Chr3 295384786 295385665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3503 135 258 Eukaryotic Initiation Factors Gene Family AT5G11170 86.290 4.08e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3503 K12812 - gmx:100796232 244.973