Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3502 TCCTCCATTGCCGTAATCAACCATCCTCAATTTCCCGGATTTCTATCTAAGAAGAAAAAGCCTCAAAGTCTAGTCAACCTTTGCATTGGAGTTCTTGGAAGACCTTTGGAGGATATTATTGAAGATTTGGAAGAGATTGCTATCGGCTTGCCGAGTGATATTAAGTTAGCAGTGGCAGCGATTGCTAGACGAAGAAAGTTGCTGAGTGATGATGTCTTGATTGCGTTAGCTGATGCTTCCTGGGAAATCCTTGATGTCTCTGGCTTAGATGTTTCGGATTTTGGCTTGATAAAAGCAGCTGAAAGATGTGAGACGGTTGCAGTTAAAGTTCTTGGTGCTAATTCAAGACAAGGAGAACAAGAATTTTTAACTGAGGTTCTATTACTTGGAAGATTACATCACAAAAACCTTGTGGCTTTGGTGGGATATGCTACGGAAAGAGGACGACATATGCTCCTTTACATTTACATGAGCAATGGCAGTTTTGCTTCTCATTTATATGGAAAAGATTATGAGCCATTAAGCTGGGATTTGAGACTTAGCATAGCACTAGATGTTGCAAGGGGGCTAATGGAATACGTAAAACTAGCTGCCATGGAAAGTGAGGGCAAGATTGGATGGGAAGAAATTGTGGATCCGCAACTGAATGAAAACTATGATGTAAACAAGCTTAATGATATGGCCTCACTTGCATTCAAATGTGTCAGTGGAGTTTCCAAAACTAGACCTTCAATGAGGACTGTTGTTCAAGCATTATCTAAGCTTTATAAGAAGCCTAAAAGAAATCATAGCCAGACATCTTCTACTGCACAGCCGATAATCATAGGAGTTTGTCGCCACTTGGTTGCGGAAGAAGTGAAGGCCCTCTCTGACTGTATATCACAAGTGAAGAAGATTATTGATCACTATGGAGATTCTGACGGCCTCGCTGTTTCGACAAGCAGCATTTGTCAAATGCAATCTCTGATGCTGTTAACCATGGGCTATGTCGCGGATGTACTCATGTGCAACATAACCTCTGCACAAGAAATTTCTGATCAAGTGGAGAGCAACTGTTTTGTTGATGCCGCCATTGTTTCTGCAAACTACAGCATCATAGCCGAACCACCACCTGCACCTGCTACCCCTCGGGTCAAGGATGAGCCGATTTATATGCGCAACTTCACTTCTGATCAAAGATCAAATGCCGTTGGTATTTCACAGTCTCTAGCTATGGCATATGTTATGGATCAGAAAGCAATGTTACTTCAGCAATCAACATGGAAAAATAATGTCAGGATGAATAATTTGGTTGAGCAAATCCATGGTCCACTTTCAAGCATTCAATCCTTGAGTAAAATCCTGTCTACACAAACAAAGAAAAGTCAGATTTCACATGACATTGTTGAGGATATCTTGGTGCTAGGTGATCGTTTGAGGGATGTTCTCCATCAACTTCAGGATGTTGTATATGTGACGAAGACTAATATTATGCGCCACAATGAAGAAGCAATCGAGGAAATGAATCACATGCTTGCTGAATCAGAAAAAACTCAATCGCTAGATAGTTCTCTAGTGGACAAGCTGCTTGTGGAATGCAACTTTCCATCTATATGCATTCATTCTGGAATGTCCCAGGAAGAAAGGTTGAAGCGTTATAAAGGTTTAAAGGAGGGACATACCAGGATTCTTGTAGCAACCGATTTGGTTGGCAGAGGAATTGACATTGAACGCGTGAATATTGTGACAAACTATGACATGCCTGACTCTGCAGACACATGCTTACACAGAGTTGGCCGAGCTGGAAGGTTTGGCACCAAAGGCCTTGCAACTACATTTGTTTCATGTTCACCCGATGTTGACGTTCTCAATAATGTTCAGTCCCGGTTTGAGGTGGATATGAAACAGCTTCCTGAGCAGATTGATACATCTACATACATGCCATCACTTTCGTCCGGAAATCCACCTCAAGCTGCTGTTGCTGTTGCGGAAACCAGTTCGCCTAATGAAACCGCCGACTCAATTACACAAACTGACCAAGGAAAATCTTCAATTGAGTGA 2040 0.4191 SSIAVINHPQFPGFLSKKKKPQSLVNLCIGVLGRPLEDIIEDLEEIAIGLPSDIKLAVAAIARRRKLLSDDVLIALADASWEILDVSGLDVSDFGLIKAAERCETVAVKVLGANSRQGEQEFLTEVLLLGRLHHKNLVALVGYATERGRHMLLYIYMSNGSFASHLYGKDYEPLSWDLRLSIALDVARGLMEYVKLAAMESEGKIGWEEIVDPQLNENYDVNKLNDMASLAFKCVSGVSKTRPSMRTVVQALSKLYKKPKRNHSQTSSTAQPIIIGVCRHLVAEEVKALSDCISQVKKIIDHYGDSDGLAVSTSSICQMQSLMLLTMGYVADVLMCNITSAQEISDQVESNCFVDAAIVSANYSIIAEPPPAPATPRVKDEPIYMRNFTSDQRSNAVGISQSLAMAYVMDQKAMLLQQSTWKNNVRMNNLVEQIHGPLSSIQSLSKILSTQTKKSQISHDIVEDILVLGDRLRDVLHQLQDVVYVTKTNIMRHNEEAIEEMNHMLAESEKTQSLDSSLVDKLLVECNFPSICIHSGMSQEERLKRYKGLKEGHTRILVATDLVGRGIDIERVNIVTNYDMPDSADTCLHRVGRAGRFGTKGLATTFVSCSPDVDVLNNVQSRFEVDMKQLPEQIDTSTYMPSLSSGNPPQAAVAVAETSSPNETADSITQTDQGKSSIE* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3502 679 CDD SF2_C_DEAD 521 607 - -
Psa3g3502 679 Pfam Helicase conserved C-terminal domain 508 598 IPR001650 -
Psa3g3502 679 SMART tyrkin_6 83 252 IPR020635 GO:0004713|GO:0006468
Psa3g3502 679 Gene3D Transferase(Phosphotransferase) domain 1 97 192 - -
Psa3g3502 679 Gene3D Transferase(Phosphotransferase) domain 1 193 278 - -
Psa3g3502 679 Gene3D - 471 643 IPR027417 -
Psa3g3502 679 SMART helicmild6 517 598 IPR001650 -
Psa3g3502 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 633 IPR027417 -
Psa3g3502 679 MobiDBLite consensus disorder prediction 642 679 - -
Psa3g3502 679 SUPERFAMILY Protein kinase-like (PK-like) 99 190 IPR011009 -
Psa3g3502 679 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 189 277 - -
Psa3g3502 679 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 101 190 - -
Psa3g3502 679 Pfam Protein tyrosine and serine/threonine kinase 99 194 IPR001245 GO:0004672|GO:0006468
Psa3g3502 679 PANTHER OS01G0253100 PROTEIN 101 190 IPR045271 GO:0004714|GO:0006468
Psa3g3502 679 PANTHER OS01G0253100 PROTEIN 189 277 IPR045271 GO:0004714|GO:0006468
Psa3g3502 679 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 478 638 IPR001650 -
Psa3g3502 679 Coils Coil 491 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3502 Psa-Chr3 295363464 295366910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3502 519 642 Eukaryotic Initiation Factors Gene Family AT5G11170 84.677 6.84e-69 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Psa3g3502 Helicase_C 5.1e-21 CL0023