Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3499 ATGTCAAGGCCTCTCTCCCAGTTTTTCAGGATCATAGTTACTGAATATCATCAACAAAAAAAGCTTGTAAAACCCTGTATGTTACCAATAAAGATTGTGAAGAAATATGGAGAAGGTTTAGCAAAAGTTATCTGTTTAAAGACTCCTGATGGTGAAGAATGGAAAATAAATTTGGTGAACAATGATGGCAAAATATGGTTTGGAAAAGGTTGGAAGGAATTCACACAGTATTATTCTCTATGTCAGGGCCATCTTCTGATGTTTAAATATCAAAGAAGTTCTGAATTTCATGTAGACATCTTTGATAATACAACCGTTGAGATAAACTACCCTCTCAAAAGAGTTGAAGCTGAAAAGGTTTCAAACAATGAGGAAGATCGTAGAACAAGTAAGAAGAGAAAAGCTAACTCTTCCTTTGAATTTGGAAGCACTAGTTGTGCCAAGCATCATCCTCACAAGAGAAGCAAAGTAAAACAAGTGAAAACAACACTTGAAAGGGCAAAAGAGTTCAAAACATCTAATCCATCATTTATTCTTGCCATGGGTACATCATATGTTGAAAGCAGATATTGTTTGACAATTCCTTGTGAATTTGGTAAGAGACATTTTGACTTGAAAAAGAAGATAGGAGACATTTATTTTGGGATGTTGGGTGAGGAAAGAGTTTGGCGTGCACGGTACGCAATCAAGATGAACAGAAGAAGAATGAAGTTTGAAGTCACAGGTGGATGGTATAAATTCTCAAAGTACAATAATTTGAGAGTCGGTGATGTTTGTAACTTTGAGCTCATTCTTAAGACTGACATGACTTTTCAAGTTCACATTTTTAGAAAAACAAATGAAGACAACAGTAAGACTAATTGA 864 0.3495 MSRPLSQFFRIIVTEYHQQKKLVKPCMLPIKIVKKYGEGLAKVICLKTPDGEEWKINLVNNDGKIWFGKGWKEFTQYYSLCQGHLLMFKYQRSSEFHVDIFDNTTVEINYPLKRVEAEKVSNNEEDRRTSKKRKANSSFEFGSTSCAKHHPHKRSKVKQVKTTLERAKEFKTSNPSFILAMGTSYVESRYCLTIPCEFGKRHFDLKKKIGDIYFGMLGEERVWRARYAIKMNRRRMKFEVTGGWYKFSKYNNLRVGDVCNFELILKTDMTFQVHIFRKTNEDNSKTN* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3499 287 CDD B3_DNA 175 277 IPR003340 GO:0003677
Psa3g3499 287 SMART B3_2 8 104 IPR003340 GO:0003677
Psa3g3499 287 SMART B3_2 177 279 IPR003340 GO:0003677
Psa3g3499 287 CDD B3_DNA 27 102 IPR003340 GO:0003677
Psa3g3499 287 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 278 - -
Psa3g3499 287 MobiDBLite consensus disorder prediction 119 135 - -
Psa3g3499 287 ProSiteProfiles B3 DNA-binding domain profile. 28 104 IPR003340 GO:0003677
Psa3g3499 287 Gene3D - 154 281 IPR015300 -
Psa3g3499 287 MobiDBLite consensus disorder prediction 119 158 - -
Psa3g3499 287 PANTHER B3 DOMAIN-CONTAINING 6 278 - -
Psa3g3499 287 Pfam B3 DNA binding domain 177 278 IPR003340 GO:0003677
Psa3g3499 287 Pfam B3 DNA binding domain 27 103 IPR003340 GO:0003677
Psa3g3499 287 SUPERFAMILY DNA-binding pseudobarrel domain 170 279 IPR015300 -
Psa3g3499 287 Gene3D - 3 105 IPR015300 -
Psa3g3499 287 SUPERFAMILY DNA-binding pseudobarrel domain 25 111 IPR015300 -
Psa3g3499 287 ProSiteProfiles B3 DNA-binding domain profile. 177 279 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3499 Psa-Chr3 295151017 295152506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3499 4 115 B3 DNA Binding Superfamily AT4G01580 35.714 6.75e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa3g3499 B3 5.9e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3499 - - mtr:MTR_7g050580 295.819