Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3493 ATGGGGGATTCTTCTTACGGCACGCGTGAATTTCCCACATCCAATGCCTTCCCAGAATCACCTATTCCTTCAGAGGTTGGGAAACCACCTAGGCGGGCCAAACGACCAAAGGAAACACTTGAATGGAAGAGTAGTCAGGAAATTATAAGCGAAAGTGATGAACTTACCAAGCAGTTAGCGGTCTCAAAGGCTGATTGGAAACCCCAGGACTTGGCACTGAATCAAGTTGCATACGACGATTCAACCATGCCAGCACCAGTGTGCTCTTGTACTGGCGTTCTCAGACGGTGCTACAAATGGGGTAATGGAGGTTGGCAATCTGCTTGTTGTACAACCACTTTATCGGTGTATCCACTTCCAGCAGTGCCCAACAAAAGGCATGCACGAGTAGACGGTAGGAAAATGAGTGGAAGTGCTTTTAATAAGCTGCTTAGCCGGCTTGCAGCTGAAGGACATGATCTCTCACACCCAGTTGACCTTAAAGACCATTGGGCCAAGCATGGATCCTTATTTAATGGTTATTCTCAATCTTTGCCATCTGGATCAAATCTTAACCATTCAACTGCCTTGTACTCCTCCATTGTTGCTTCAGGAGATGATATTCCTGAGTTGCACCATAGGAAGCTTCTTCCCAAACAACTCCTGGTAAAAGAAACTTCTGCGGTGGATAACACTCTGAGGCTCAGCCGCAAACACCTCACCATAACCACTTCTACCGATGGCACTGCAAATTTGCATGTGGAAGGGACGAATCCAGTTGTTGTTAATTTTGGGAATAAGAGAAGGAAGCTTAACTCCAAAGAAACGGTTACTATTTCTAATGGAGATGTAATTGAGCTCATTCCTGGTCACCACCTTTTTAAATATCAAGTATTGCAAAGATCTTCAAGGGGTGCAGATAAAGAAGCCCATGATCGAGGAAGAAGTGGAGTCACACAAAAGTGTGATAAAATTGCAGTGACACAAAAGTGTGATAAAATTGCAGTGACACAAAAGTGTGATAAAATTGCAGTGACACAAAAGCGTGGTTATTCCCGGTCACGTGAGGAAGCTATTCGTGATTTTTATGTAGCTGAAGATCAAATACCTTGCACCTTTCGACTTTTGCGTGTGCAAAGGTTACCGGCCTGGGCTAATACTTCATGTGTTTCAATAAGTGATGTTATACAGGGGGATATTCTAGTTGCTATCCTTTCAAACTACATGGTAGACATTGACTGGTTGGTTCCTGCTTGTCCTGCACTTTCAAAAGTTCCCCACGTGCTTGTTCTTCATGGAGAGGGTGATGAGAGGGTGGCTTGCATGAAGATAAGCAAACCTAAAAATTGGATTTTACACAAACCGCCTCTTCCAATCTCATTTGGGACACACCATTCAAAGGCCATGCTTCTTGTATATCCTCGAGGAGTAAGAGTCATCGTACATACAGCAAACTTAATTTATGTAGATTGGAACAATAAAAGCCAAGGTCTGTGGATGCAAGATTTTCCATGGAAAGATCAAAATAGTCCGAGCAAGGGATCCGGATTTGAAAATGATTTGGTTGAATATCTCAGTGCACTGAAGTGGCCAGAATTCTCTGTTAATCTTCCATCCCTCGGAAACTTTAGCATATGTCCATCATTTTTCAAGAAGTTTGATTATAGTGATGCAATGGTTAGATTAATTGCATCTGTACCTGGATATCATTCTGGTAATGGTTTGAAAAAGTGGGGTCATATGAAGCTTCGTTCTGTGCTCCAAGAATGTACATTTAATGAAGAGTTTAAAAAATCTCCCCTTGTTTATCAGTTCTCCTCCCTTGGCTCTTTAGATGAAAAATGGATGGTTGAATTGGCATCATCAATGTCAGCAGGTCTCTCTGAAGATAAAGTACCCCTTGGCATGGGGGAGCCTCAAATAATATGGCCTACTGTAGAAGATGTCAGATGCTCAATAGAGGGTTATGCTGCTGGCGGTGCAATCCCAAGTCCTATGAAGAATGTAGAGAAAGCATTTTTGAAAAAGTATTGGGCAAAGTGGAAAGCAAGCCATACTGGTCGCTCCCATGCTATGCCACATATAAAGACTTTTGCTCGTTACAATAATCAGAATCTCGCTTGGTTCTTGTTAACTTCTGCAAATCTGAGCAAAGCTGCCTGGGGAGCTCTTCAGAAGAATAACAGCCAGTTGATGATTCGTTCATACGAGCTGGGAGTGCTCTTTCTACCGTCATTATTGAAACGCGGATGTGGATTTTCCTGTACCAGTAATGTGAAACAATCGAAGGTGCCTGACATGTCCTTTTTTTCATAA 2295 0.427 MGDSSYGTREFPTSNAFPESPIPSEVGKPPRRAKRPKETLEWKSSQEIISESDELTKQLAVSKADWKPQDLALNQVAYDDSTMPAPVCSCTGVLRRCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVDGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGSLFNGYSQSLPSGSNLNHSTALYSSIVASGDDIPELHHRKLLPKQLLVKETSAVDNTLRLSRKHLTITTSTDGTANLHVEGTNPVVVNFGNKRRKLNSKETVTISNGDVIELIPGHHLFKYQVLQRSSRGADKEAHDRGRSGVTQKCDKIAVTQKCDKIAVTQKCDKIAVTQKRGYSRSREEAIRDFYVAEDQIPCTFRLLRVQRLPAWANTSCVSISDVIQGDILVAILSNYMVDIDWLVPACPALSKVPHVLVLHGEGDERVACMKISKPKNWILHKPPLPISFGTHHSKAMLLVYPRGVRVIVHTANLIYVDWNNKSQGLWMQDFPWKDQNSPSKGSGFENDLVEYLSALKWPEFSVNLPSLGNFSICPSFFKKFDYSDAMVRLIASVPGYHSGNGLKKWGHMKLRSVLQECTFNEEFKKSPLVYQFSSLGSLDEKWMVELASSMSAGLSEDKVPLGMGEPQIIWPTVEDVRCSIEGYAAGGAIPSPMKNVEKAFLKKYWAKWKASHTGRSHAMPHIKTFARYNNQNLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLFLPSLLKRGCGFSCTSNVKQSKVPDMSFFS* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3493 764 MobiDBLite consensus disorder prediction 1 40 - -
Psa3g3493 764 SUPERFAMILY Phospholipase D/nuclease 363 577 - -
Psa3g3493 764 MobiDBLite consensus disorder prediction 1 20 - -
Psa3g3493 764 SMART GAGA_bind_2 1 168 IPR010409 -
Psa3g3493 764 Pfam GAGA binding protein-like family 5 169 IPR010409 -
Psa3g3493 764 Gene3D Endonuclease Chain A 553 762 - -
Psa3g3493 764 Pfam Tyrosyl-DNA phosphodiesterase 366 748 IPR010347 GO:0005634|GO:0006281|GO:0008081
Psa3g3493 764 Gene3D - 217 293 - -
Psa3g3493 764 PANTHER TYROSYL-DNA PHOSPHODIESTERASE 1 229 748 IPR010347 GO:0005634|GO:0006281|GO:0008081
Psa3g3493 764 CDD PLDc_Tdp1_1 383 518 - -
Psa3g3493 764 SUPERFAMILY Phospholipase D/nuclease 553 744 - -
Psa3g3493 764 SUPERFAMILY SMAD/FHA domain 227 292 IPR008984 GO:0005515
Psa3g3493 764 Gene3D Endonuclease Chain A 352 550 - -
Psa3g3493 764 PANTHER TYROSYL-DNA PHOSPHODIESTERASE 1 229 748 - -
Psa3g3493 764 CDD FHA 227 291 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3493 Psa-Chr3 294742776 294754974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3493 1 169 BBR or BPC Transcription factor family AT5G42520 56.219 4.22e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Psa3g3493 Tyr-DNA_phospho 1.1e-95 CL0479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3493 K10862 - gmx:100793746 830.861